Factsheet for TraesCS6D01G139500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

mitochondrion 4
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G258400.1	Wheat	cytosol	36.63	96.1
TraesCS4D01G138800.1	Wheat	cytosol	36.63	96.1
TraesCS7D01G075700.1	Wheat	cytosol	36.14	94.81
TraesCS3D01G410700.1	Wheat	mitochondrion	74.26	93.46
ATMG00510.1	Thale cress	mitochondrion	90.59	92.89
TraesCS4D01G160900.1	Wheat	cytosol	25.74	91.23
KRH15676	Soybean	mitochondrion	38.37	78.68
TraesCS2D01G243700.1	Wheat	plastid	30.69	31.55
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	30.45	31.38
CDY65733	Canola	cytosol	46.04	29.76
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	15.1	25.1
TraesCS3D01G177500.1	Wheat	cytosol	3.22	18.31

Protein Annotations

Gene3D:1.10.645.20	MapMan:2.4.1.2.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114
InterPro:IPR038290	HAMAP:MF_01358	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NDH1_su_D/H	InterPro:NiFe-Hase_large
PFAM:PF00346	PANTHER:PTHR11993	PANTHER:PTHR11993:SF10	SUPFAM:SSF56762	TIGRFAMs:TIGR01962	EnsemblPlantsGene:TraesCS6D01G139500
EnsemblPlants:TraesCS6D01G139500.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:108482782..108488766

Molecular Weight (calculated)

45203.8 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.370

Length

404 amino acids

Sequence
(BLAST)

001: MTTRNGQIKN FTSNSGPQHP AAHGVSRSVL EMNGEVVEHA EPHIGSLQGI RPAGAHPTRG TEKFVEYKTY LQALPYFDRL DYVSTMAQEH AHSSAVEKLL
101: NCEVPLRAQY IRVLFCEITR ISNHSLASTT HAMDVGASTP FLWAFEEREK LLEFYERVPG ARMHASFIRP GGVAQDLPLG ICRDIDSSTQ QFASRIDELE
201: EMSTGNRIWK QRLVDIGIVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SVQIIVQCPN QMPSGMIKAD
301: DRKLCPPSRS RMKLSMESSI HHFELYTEGF SVPAPSTYTA IEAPKGEFCV FLVSNGSNRP YRCKIRAPGF AHSQGLDSMS KHHMPADVVT IIGTQDIVFG
401: EVDI

Best Arabidopsis Sequence Match ( ATMG00510.1 )
(BLAST)

001: MTTRKRQIKN FTSNFGPQHP AAHGVSRLVL EMNGEVVERA EPHIGSLHRG TEKLIEYKTY LQALPYSDRS DYVSMMAQEH AHSSAVEKLL NCEVPLRAQY
101: IRVLFREITR ISNHSLALTT HAMDVGALTP FLWAFEEREK LLEFYERVSG ARMHASFIRP GGVAQDLPLG LCRDIDSFTQ QFASRIDELE EMSTGNRIWK
201: QRLVDIGTVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SLRIIVQCLN QMPSGMIKAD DRKLCPPSRC
301: RMKLSMESSI HHFELYTEGF SVPASSTYTA VEAPKGEFGV FLVSNGSNRP YRRKIRAPGS AHSQGLDSMS KHHMPADVVT IIGTQDIVFG EVDR

Arabidopsis Description

NAD7Nad7 [Source:UniProtKB/TrEMBL;Acc:G1C2X4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.