CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	mitochondrion

mitochondrion: 21766870
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G093790.1	Barley	cytosol	13.71	79.41
TraesCS3A01G269100.1	Wheat	cytosol	51.27	71.63
OQU91808	Sorghum	cytosol	23.86	69.12
Solyc07g042310.1.1	Tomato	cytosol, mitochondrion, nucleus	20.81	66.13
TraesCS4D01G138800.1	Wheat	cytosol	51.27	65.58
TraesCS1D01G258400.1	Wheat	cytosol	51.27	65.58
TraesCS1B01G385800.1	Wheat	cytosol	51.27	65.58
TraesCS1A01G156900.1	Wheat	cytosol	51.27	65.58
TraesCS4B01G146100.1	Wheat	cytosol	50.76	64.94
TraesCS4A01G069400.1	Wheat	cytosol	50.76	64.94
TraesCS3B01G013700.1	Wheat	cytosol	50.76	64.94
TraesCS1B01G262900.1	Wheat	cytosol	50.76	64.94
TraesCS7A01G387700.1	Wheat	cytosol	50.76	64.94
TraesCS7D01G075700.1	Wheat	cytosol	50.76	64.94
TraesCSU01G157900.1	Wheat	cytosol	50.76	64.94
Zm00001d040819_P001	Maize	cytosol	50.76	64.94
TraesCS4B01G237800.1	Wheat	cytosol	49.75	63.64
TraesCS7A01G526400.1	Wheat	cytosol	49.75	63.64
Solyc01g065770.1.1	Tomato	mitochondrion	39.09	61.11
TraesCS4D01G160900.1	Wheat	cytosol	33.5	57.89
Solyc09g009360.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	51.78	56.67
TraesCS3D01G410700.1	Wheat	mitochondrion	77.67	47.66
Solyc10g052800.1.1	Tomato	cytosol	22.34	42.31
Zm00001d046260_P002	Maize	mitochondrion	79.19	39.59
ATMG00510.1	Thale cress	mitochondrion	79.19	39.59
GRMZM5G856027_P02	Maize	cytosol, mitochondrion, peroxisome, plastid	79.19	39.59
TraesCS6D01G139500.1	Wheat	golgi, plastid, unclear	78.68	38.37
VIT_00s0332g00160.t01	Wine grape	cytosol, mitochondrion, nucleus	54.82	36.12
TraesCS3B01G122100.1	Wheat	mitochondrion	18.78	34.26
KRG99586	Soybean	cytosol, mitochondrion, plastid	25.38	15.02
CDY65733	Canola	cytosol	44.67	14.08
PGSC0003DMT400074912	Potato	cytosol	2.03	2.38
KRG90337	Soybean	extracellular	1.02	1.74
KRH01226	Soybean	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	UniProt:A0A0R0GBL8	EMBL:ACUP02008628	EnsemblPlantsGene:GLYMA_14G103300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016651
GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	EnsemblPlants:KRH15676	ProteinID:KRH15676
ProteinID:KRH15676.1	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	PANTHER:PTHR11993
PANTHER:PTHR11993:SF10	SUPFAM:SSF56762	UniParc:UPI0006EDD764	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:10367617..10370409

Molecular Weight (calculated)

22480.7 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.244

Length

197 amino acids

Sequence
(BLAST)

001: MTTRNGKIKN FTLNFGPQHP TAHGVSRPVF EMNGEVVEHA KPHIGSLYTA YTRISFRGTE ELVECKTYLQ ALPYFDHLEE HAHSSAVERL LNCEVPLWAQ
101: YIRVLFREIT RISNHLPTLT THAMDVGAST LSLWAFEEWE KLLEFYERVS GARMHASFIR PGRVAQDLPL GLCQDIDCFT HQFASCIDEL EEVSTGN

Best Arabidopsis Sequence Match ( ATMG00510.1 )
(BLAST)

001: MTTRKRQIKN FTSNFGPQHP AAHGVSRLVL EMNGEVVERA EPHIGSLHRG TEKLIEYKTY LQALPYSDRS DYVSMMAQEH AHSSAVEKLL NCEVPLRAQY
101: IRVLFREITR ISNHSLALTT HAMDVGALTP FLWAFEEREK LLEFYERVSG ARMHASFIRP GGVAQDLPLG LCRDIDSFTQ QFASRIDELE EMSTGNRIWK
201: QRLVDIGTVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SLRIIVQCLN QMPSGMIKAD DRKLCPPSRC
301: RMKLSMESSI HHFELYTEGF SVPASSTYTA VEAPKGEFGV FLVSNGSNRP YRRKIRAPGS AHSQGLDSMS KHHMPADVVT IIGTQDIVFG EVDR

Arabidopsis Description

NAD7Nad7 [Source:UniProtKB/TrEMBL;Acc:G1C2X4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.