Factsheet for Solyc09g009360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g065770.1.1	Tomato	mitochondrion	55.0	78.57
Solyc07g042310.1.1	Tomato	cytosol, mitochondrion, nucleus	25.0	72.58
Solyc10g052800.1.1	Tomato	cytosol	35.56	61.54
KRH15676	Soybean	mitochondrion	56.67	51.78
ATMG00510.1	Thale cress	mitochondrion	90.56	41.37
Zm00001d046260_P002	Maize	mitochondrion	89.44	40.86
GRMZM5G856027_P02	Maize	cytosol, mitochondrion, peroxisome, plastid	89.44	40.86
BAV58152	Barley	mitochondrion	89.44	40.86
HORVU0Hr1G037100.1	Barley	mitochondrion	89.44	39.85
HORVU0Hr1G033630.1	Barley	mitochondrion	89.44	39.85
HORVU2Hr1G015540.1	Barley	mitochondrion	86.11	38.37
Solyc01g011410.1.1	Tomato	nucleus	12.22	30.14
Solyc10g047470.1.1	Tomato	mitochondrion	14.44	28.26
Solyc08g022160.1.1	Tomato	cytosol	10.0	24.66
CDY65733	Canola	cytosol	75.56	21.76
Solyc02g011810.1.1	Tomato	cytosol	6.11	19.64
Solyc10g047460.1.1	Tomato	cytosol	6.11	18.03
Solyc08g022170.1.1	Tomato	plastid	12.22	16.3
Solyc01g017740.1.1	Tomato	nucleus	6.67	12.37
Solyc07g032420.1.1	Tomato	cytosol	2.78	2.69
Solyc12g035590.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114
InterPro:IPR038290	UniProt:K4CQW5	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346
PANTHER:PTHR11993	PANTHER:PTHR11993:SF10	SUPFAM:SSF56762	EnsemblPlantsGene:Solyc09g009360.1	EnsemblPlants:Solyc09g009360.1.1	UniParc:UPI000276C4DC

Description

No Description!

Coordinates

chr9:+:2764107..2764649

Molecular Weight (calculated)

20354.2 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.187

Length

180 amino acids

Sequence
(BLAST)

001: MAQEHAHSST VERLLNCEVP LRAQYIRVLF REITQISNHS LALTTHAMDV GASTPFLWAF EEREKLLEFY ERVSGAGMHA SFIRPGGVAQ DLPLGLCIDI
101: DSFTRQFASR IDELEEMSTG NRIWKQRLVD IGTVTAQQAK DWGFSGVMLR GSGVCWDLRK AAPYDVHDQL DPDRIVIAEY

Best Arabidopsis Sequence Match ( ATMG00510.1 )
(BLAST)

001: MTTRKRQIKN FTSNFGPQHP AAHGVSRLVL EMNGEVVERA EPHIGSLHRG TEKLIEYKTY LQALPYSDRS DYVSMMAQEH AHSSAVEKLL NCEVPLRAQY
101: IRVLFREITR ISNHSLALTT HAMDVGALTP FLWAFEEREK LLEFYERVSG ARMHASFIRP GGVAQDLPLG LCRDIDSFTQ QFASRIDELE EMSTGNRIWK
201: QRLVDIGTVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SLRIIVQCLN QMPSGMIKAD DRKLCPPSRC
301: RMKLSMESSI HHFELYTEGF SVPASSTYTA VEAPKGEFGV FLVSNGSNRP YRRKIRAPGS AHSQGLDSMS KHHMPADVVT IIGTQDIVFG EVDR

Arabidopsis Description

NAD7Nad7 [Source:UniProtKB/TrEMBL;Acc:G1C2X4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.