Factsheet for Solyc01g017740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042310.1.1	Tomato	cytosol, mitochondrion, nucleus	6.19	9.68
Solyc02g011810.1.1	Tomato	cytosol	5.15	8.93
Solyc08g022170.1.1	Tomato	plastid	11.34	8.15
Solyc01g065770.1.1	Tomato	mitochondrion	10.31	7.94
Solyc09g009360.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	12.37	6.67
Solyc10g047470.1.1	Tomato	mitochondrion	6.19	6.52
TraesCS3D01G177500.1	Wheat	cytosol	4.12	5.63
Solyc01g011410.1.1	Tomato	nucleus	4.12	5.48
Solyc08g022160.1.1	Tomato	cytosol	3.09	4.11
Solyc10g052800.1.1	Tomato	cytosol	3.09	2.88
Solyc07g032420.1.1	Tomato	cytosol	3.09	1.61
HORVU2Hr1G049060.1	Barley	cytosol	1.03	0.92
CAA33949	Rice	cytosol	0.0	0.0
KRH01226	Soybean	cytosol	0.0	0.0
Solyc10g047460.1.1	Tomato	cytosol	0.0	0.0
Solyc12g035590.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158	InterPro:IPR005797
InterPro:IPR027387	UniProt:K4AUV5	InterPro:NiFe-Hase_large	PFAM:PF00033	PFscan:PS51002	PANTHER:PTHR19271
PANTHER:PTHR19271:SF8	SUPFAM:SSF56762	SUPFAM:SSF81342	EnsemblPlantsGene:Solyc01g017740.1	EnsemblPlants:Solyc01g017740.1.1	UniParc:UPI0002762B36

Description

No Description!

Coordinates

chr1:-:25132496..25132789

Molecular Weight (calculated)

10692.2 Da

IEP (calculated)

6.952

GRAVY (calculated)

0.358

Length

97 amino acids

Sequence
(BLAST)

1: MLWTYQIGYW AVKIVTGVPD AIPVIGSPLV ELLRGSASVG QSTLTRFYSL HTFVLPQHPS MHSVLRLIVT LDGEDVVDCE PILGYLHRGM EKIAKAS

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.