Factsheet for Solyc08g022160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g011410.1.1	Tomato	nucleus	69.86	69.86
Solyc10g047470.1.1	Tomato	mitochondrion	45.21	35.87
Solyc02g011810.1.1	Tomato	cytosol	27.4	35.71
CDX95226	Canola	cytosol	63.01	19.17
CDY19660	Canola	cytosol	63.01	19.17
CDY21195	Canola	cytosol	63.01	19.17
HORVU3Hr1G075000.1	Barley	cytosol, mitochondrion	43.84	16.16
Solyc07g042310.1.1	Tomato	cytosol, mitochondrion, nucleus	13.7	16.13
ATCG01110.1	Thale cress	cytosol	67.12	12.47
Solyc09g009360.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	24.66	10.0
Solyc10g052800.1.1	Tomato	cytosol	12.33	8.65
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	8.22	8.45
Solyc01g065770.1.1	Tomato	mitochondrion	13.7	7.94
KRG99586	Soybean	cytosol, mitochondrion, plastid	32.88	7.21
Solyc10g047460.1.1	Tomato	cytosol	2.74	3.28
Solyc07g032420.1.1	Tomato	cytosol	8.22	3.23
Solyc01g017740.1.1	Tomato	nucleus	4.11	3.09
HORVU1Hr1G065340.1	Barley	cytosol	5.48	1.62
Solyc12g035590.1.1	Tomato	cytosol	1.37	1.47
Solyc08g022170.1.1	Tomato	plastid	0.0	0.0
CDY21194	Canola	cytosol	0.0	0.0
CDY19659	Canola	cytosol	0.0	0.0
CDX95225	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114
InterPro:IPR038290	UniProt:K4CJN6	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346
PANTHER:PTHR11993	PANTHER:PTHR11993:SF27	SUPFAM:SSF56762	EnsemblPlantsGene:Solyc08g022160.1	EnsemblPlants:Solyc08g022160.1.1	UniParc:UPI000276BA99

Description

No Description!

Coordinates

chr8:+:31766355..31766576

Molecular Weight (calculated)

8388.2 Da

IEP (calculated)

4.585

GRAVY (calculated)

0.066

Length

73 amino acids

Sequence
(BLAST)

1: MRMMHNYFRI GGVASDLPYG WIEKCLDFCN YFLEGLMSIK TYYSKSYFLE GDEGVGIIGR DEAINWGLSG LML

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.