CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95225	Canola	cytosol	33.63	82.96
CDY19659	Canola	cytosol	33.63	82.96
CDY21194	Canola	cytosol	33.63	82.96
Solyc08g022170.1.1	Tomato	plastid	33.03	81.48
VIT_06s0004g07410.t01	Wine grape	cytosol	21.92	80.22
HORVU3Hr1G075000.1	Barley	cytosol, mitochondrion	44.44	74.75
ATCG01110.1	Thale cress	cytosol	76.58	64.89
GRMZM5G853723_P01	Maize	plastid	75.08	63.61
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	74.47	63.27
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	74.47	63.27
TraesCS2D01G243700.1	Wheat	plastid	74.17	62.85
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	73.87	62.6
CAA33911	Rice	mitochondrion, plastid	73.27	62.09
TraesCS1B01G405900.1	Wheat	cytosol	62.46	60.64
CDY21195	Canola	cytosol	39.64	55.0
CDY19660	Canola	cytosol	39.64	55.0
CDX95226	Canola	cytosol	39.64	55.0
HORVU1Hr1G065340.1	Barley	cytosol	39.64	53.44
KRG90337	Soybean	extracellular	18.02	52.17
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	37.54	51.44
KRH01226	Soybean	cytosol	13.81	50.55
PGSC0003DMT400022652	Potato	mitochondrion	34.23	49.57
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	9.31	43.66
VIT_10s0116g00060.t01	Wine grape	plasma membrane	49.25	37.19
Solyc08g022160.1.1	Tomato	cytosol	7.21	32.88
KRH15676	Soybean	mitochondrion	15.02	25.38
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	7.51	8.77

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	UniProt:A0A0R0F8X5	EMBL:ACUP02011211	EnsemblPlantsGene:GLYMA_18G155700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016651
GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	EnsemblPlants:KRG99586	ProteinID:KRG99586
ProteinID:KRG99586.1	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	PANTHER:PTHR11993
PANTHER:PTHR11993:SF27	SUPFAM:SSF56762	UniParc:UPI0006EE0181	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:33817252..33818394

Molecular Weight (calculated)

39470.8 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.167

Length

333 amino acids

Sequence
(BLAST)

001: MNISTTRKDF MIVNMGLHHP SMHGVLRLIV TLDDEDVIDC EPILGYLHIG MEKIAENRTI IQYMSYVTRW DYLATMFTEA IIVNGPELLG NIQVPKRASY
101: IQVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFRERQL IYDLFEVATA ADLPYGWINK CYDLCDYFLT RIVEYQKLLT RSPIFLERVE GVGLVDIKED
201: LHEVDNYECY EEFDWEVQWQ KERDLLARYL VRKESIKIIQ QALEGIPDGP YENLEIRCFD REKEPEWNEF EYRFIKLYVR IEAPKGELGI FLIGDQNGFP
301: WRWKIHPLGF INLQILPQLV KKNEIGRYYD NTR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.