Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G237200.1 | Wheat | cytosol, mitochondrion, plastid | 96.17 | 96.17 |
| TraesCS7B01G080500.1 | Wheat | cytosol, mitochondrion, plastid | 95.92 | 95.67 |
| HORVU1Hr1G048080.1 | Barley | cytosol | 77.55 | 95.6 |
| TraesCS2D01G243700.1 | Wheat | plastid | 95.41 | 95.17 |
| HORVU6Hr1G037410.1 | Barley | extracellular | 70.15 | 95.16 |
| HORVU0Hr1G036480.1 | Barley | cytosol, mitochondrion, plastid | 94.9 | 94.66 |
| AGP50801 | Barley | cytosol | 89.29 | 94.59 |
| CAA33911 | Rice | mitochondrion, plastid | 94.64 | 94.4 |
| TraesCS5D01G376800.1 | Wheat | cytosol, mitochondrion, plastid | 58.42 | 94.24 |
| GRMZM5G853723_P01 | Maize | plastid | 93.62 | 93.38 |
| HORVU0Hr1G024830.2 | Barley | cytosol | 93.11 | 92.88 |
| Solyc02g011810.1.1 | Tomato | cytosol | 12.5 | 87.5 |
| HORVU5Hr1G005410.1 | Barley | cytosol, plastid | 76.28 | 85.67 |
| Solyc01g011410.1.1 | Tomato | nucleus | 15.82 | 84.93 |
| CDY21194 | Canola | cytosol | 28.83 | 83.7 |
| CDY19659 | Canola | cytosol | 28.83 | 83.7 |
| CDX95225 | Canola | cytosol | 28.83 | 83.7 |
| VIT_06s0004g07410.t01 | Wine grape | cytosol | 19.39 | 83.52 |
| CDY03033 | Canola | plastid | 82.4 | 82.19 |
| ATCG01110.1 | Thale cress | cytosol | 82.14 | 81.93 |
| CDY21195 | Canola | cytosol | 48.98 | 80.0 |
| CDX95226 | Canola | cytosol | 48.98 | 80.0 |
| CDY19660 | Canola | cytosol | 48.98 | 80.0 |
| KRG99586 | Soybean | cytosol, mitochondrion, plastid | 63.27 | 74.47 |
| PGSC0003DMT400022652 | Potato | mitochondrion | 43.62 | 74.35 |
| Bra010822.1-P | Field mustard | cytosol, mitochondrion, plastid | 12.76 | 70.42 |
| CDX90199 | Canola | cytosol, mitochondrion, plastid | 14.8 | 65.17 |
| VIT_10s0116g00060.t01 | Wine grape | plasma membrane | 54.08 | 48.07 |
| TraesCS4D01G138800.1 | Wheat | cytosol | 14.03 | 35.71 |
| TraesCS1D01G258400.1 | Wheat | cytosol | 14.03 | 35.71 |
| TraesCS7D01G075700.1 | Wheat | cytosol | 13.52 | 34.42 |
| TraesCS3D01G410700.1 | Wheat | mitochondrion | 27.04 | 33.02 |
| TraesCS4D01G160900.1 | Wheat | cytosol | 9.18 | 31.58 |
| TraesCS6D01G139500.1 | Wheat | golgi, plastid, unclear | 31.38 | 30.45 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 14.8 | 20.35 |
| TraesCS3D01G177500.1 | Wheat | cytosol | 1.79 | 9.86 |
| Solyc07g032420.1.1 | Tomato | cytosol | 1.79 | 3.76 |
Protein Annotations
| MapMan:1.1.8.1.2.1 | Gene3D:1.10.645.20 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016651 | GO:GO:0048038 | GO:GO:0051287 | GO:GO:0055114 |
| InterPro:IPR038290 | HAMAP:MF_01358 | InterPro:NADH_Q_OxRdtase_suD | InterPro:NADH_Q_OxRdtase_suD_sf | InterPro:NADH_UbQ_OxRdtase_49kDa_CS | InterPro:NDH1_su_D/H |
| InterPro:NiFe-Hase_large | PFAM:PF00346 | ScanProsite:PS00535 | PANTHER:PTHR11993 | SUPFAM:SSF56762 | EnsemblPlantsGene:TraesCS1D01G184000 |
| EnsemblPlants:TraesCS1D01G184000.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:254532995..254534175
Molecular Weight (calculated)
45673.8 Da
IEP (calculated)
5.804
GRAVY (calculated)
-0.163
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLPLTRKDL MIVNMGPQHP SMHGVLRLIV TLDGEDVIDC EPILGYLHTG MEKITENRTI IQYLPYVTRW DYLATMFTEA ITVNAPEFLE NIQIPQRASY
101: IRVIMLELSR IASHLLWLGP FMADLGAQTP FFYIFREREL IYDLFEAATG MRMMHNYFRI GGVAADLPYG WINKCLDFCD YFLRGVVEYQ QLITQNPIFL
201: ERVEGVGFIS GEEAVNWGLS GPMLRASGIQ WDLRKVDPYE SYNQFDWKVQ WQKEGDSLAR YLVRIGEMRE SIKIIQQAVE KIPGGPYENL EVRRFKKEKK
301: SEWNDFEYKF LGKKPSPNFE LSRQEYVRVE APKGELGIYL VGENSLFPWR WKIRPPGFIN LQILPQLVKR MKLADIMTIL GTIDIIMGEV DR
101: IRVIMLELSR IASHLLWLGP FMADLGAQTP FFYIFREREL IYDLFEAATG MRMMHNYFRI GGVAADLPYG WINKCLDFCD YFLRGVVEYQ QLITQNPIFL
201: ERVEGVGFIS GEEAVNWGLS GPMLRASGIQ WDLRKVDPYE SYNQFDWKVQ WQKEGDSLAR YLVRIGEMRE SIKIIQQAVE KIPGGPYENL EVRRFKKEKK
301: SEWNDFEYKF LGKKPSPNFE LSRQEYVRVE APKGELGIYL VGENSLFPWR WKIRPPGFIN LQILPQLVKR MKLADIMTIL GTIDIIMGEV DR
001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR
Arabidopsis Description
NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.