Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G237200.1 | Wheat | cytosol, mitochondrion, plastid | 96.95 | 97.19 |
| HORVU6Hr1G037410.1 | Barley | extracellular | 71.25 | 96.89 |
| HORVU1Hr1G048080.1 | Barley | cytosol | 78.37 | 96.86 |
| AGP50801 | Barley | cytosol | 90.33 | 95.95 |
| HORVU0Hr1G036480.1 | Barley | cytosol, mitochondrion, plastid | 95.93 | 95.93 |
| TraesCS1D01G184000.1 | Wheat | cytosol, mitochondrion, plastid | 95.67 | 95.92 |
| TraesCS2D01G243700.1 | Wheat | plastid | 95.67 | 95.67 |
| TraesCS1B01G405900.1 | Wheat | cytosol | 82.95 | 95.04 |
| CAA33911 | Rice | mitochondrion, plastid | 94.91 | 94.91 |
| GRMZM5G853723_P01 | Maize | plastid | 94.4 | 94.4 |
| HORVU0Hr1G024830.2 | Barley | cytosol | 94.15 | 94.15 |
| Solyc02g011810.1.1 | Tomato | cytosol | 12.47 | 87.5 |
| HORVU5Hr1G005410.1 | Barley | cytosol, plastid | 77.1 | 86.82 |
| CDY21194 | Canola | cytosol | 28.75 | 83.7 |
| CDY19659 | Canola | cytosol | 28.75 | 83.7 |
| CDX95225 | Canola | cytosol | 28.75 | 83.7 |
| Solyc01g011410.1.1 | Tomato | nucleus | 15.52 | 83.56 |
| VIT_06s0004g07410.t01 | Wine grape | cytosol | 19.34 | 83.52 |
| CDY03033 | Canola | plastid | 82.19 | 82.19 |
| ATCG01110.1 | Thale cress | cytosol | 81.93 | 81.93 |
| CDY21195 | Canola | cytosol | 48.85 | 80.0 |
| CDY19660 | Canola | cytosol | 48.85 | 80.0 |
| CDX95226 | Canola | cytosol | 48.85 | 80.0 |
| PGSC0003DMT400022652 | Potato | mitochondrion | 43.26 | 73.91 |
| KRG99586 | Soybean | cytosol, mitochondrion, plastid | 62.6 | 73.87 |
| Bra010822.1-P | Field mustard | cytosol, mitochondrion, plastid | 12.21 | 67.61 |
| CDX90199 | Canola | cytosol, mitochondrion, plastid | 14.5 | 64.04 |
| VIT_10s0116g00060.t01 | Wine grape | plasma membrane | 52.16 | 46.49 |
| TraesCS4B01G237800.1 | Wheat | cytosol | 13.49 | 34.42 |
| TraesCS1B01G262900.1 | Wheat | cytosol | 13.23 | 33.77 |
| TraesCS1B01G385800.1 | Wheat | cytosol | 13.23 | 33.77 |
| TraesCS4B01G146100.1 | Wheat | cytosol | 13.23 | 33.77 |
| TraesCS3B01G013700.1 | Wheat | cytosol | 12.98 | 33.12 |
| TraesCS3B01G122100.1 | Wheat | mitochondrion | 6.36 | 23.15 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 13.74 | 18.95 |
| Solyc07g032420.1.1 | Tomato | cytosol | 1.78 | 3.76 |
Protein Annotations
| MapMan:1.1.8.1.2.1 | Gene3D:1.10.645.20 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016651 | GO:GO:0048038 | GO:GO:0051287 | GO:GO:0055114 |
| InterPro:IPR038290 | HAMAP:MF_01358 | InterPro:NADH_Q_OxRdtase_suD | InterPro:NADH_Q_OxRdtase_suD_sf | InterPro:NADH_UbQ_OxRdtase_49kDa_CS | InterPro:NDH1_su_D/H |
| InterPro:NiFe-Hase_large | PFAM:PF00346 | ScanProsite:PS00535 | PANTHER:PTHR11993 | SUPFAM:SSF56762 | EnsemblPlantsGene:TraesCS7B01G080500 |
| EnsemblPlants:TraesCS7B01G080500.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:90402384..90403565
Molecular Weight (calculated)
45648.8 Da
IEP (calculated)
7.049
GRAVY (calculated)
-0.177
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLPLTRKDL MIVNMGPQHP SMHGVLRLIV TLDGEDVIDC EPILGYLHRG MEKITENRTI IQYLPYVTRW DYLATMFTEA ITVNAPKFLE NIQIPQRASY
101: IRVIMLELSR IASHLLWLGP FMADLGAQTP FFYIFREREL IYDLFEAATG MRMMHNYFRI GGVAANLPYG WIKKCLDFCD YFLRGVVEYQ QLITQNPIFL
201: ERVEGVGFIS GEEAVNWGLS GPMLRASGIQ SDLRKVDPYE SYNQFDWKVQ WQKEGDSLAR KLVRVGEMRE SIKIIQQAVE KIPGGPYENL EVRRFKKEKN
301: SEWNDFEYKF LGKKPSPNFE LSRQEVYVRV EAPKGELGIY LVGDDSLFPW RWKIRPPGFI NLQILPQLVK KMKLPDIMTI LGSIDIIMGE VDR
101: IRVIMLELSR IASHLLWLGP FMADLGAQTP FFYIFREREL IYDLFEAATG MRMMHNYFRI GGVAANLPYG WIKKCLDFCD YFLRGVVEYQ QLITQNPIFL
201: ERVEGVGFIS GEEAVNWGLS GPMLRASGIQ SDLRKVDPYE SYNQFDWKVQ WQKEGDSLAR KLVRVGEMRE SIKIIQQAVE KIPGGPYENL EVRRFKKEKN
301: SEWNDFEYKF LGKKPSPNFE LSRQEVYVRV EAPKGELGIY LVGDDSLFPW RWKIRPPGFI NLQILPQLVK KMKLPDIMTI LGSIDIIMGE VDR
001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR
Arabidopsis Description
NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.