Factsheet for TraesCS1B01G405900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	66.47	93.83
Solyc02g011810.1.1	Tomato	cytosol	14.58	89.29
HORVU4Hr1G027710.1	Barley	mitochondrion	51.9	84.76
Solyc01g011410.1.1	Tomato	nucleus	17.78	83.56
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	95.04	82.95
CDX95226	Canola	cytosol	56.85	81.25
CDY19660	Canola	cytosol	56.85	81.25
CDY21195	Canola	cytosol	56.85	81.25
PGSC0003DMT400022652	Potato	mitochondrion	50.15	74.78
CDY03033	Canola	plastid	83.97	73.28
ATCG01110.1	Thale cress	cytosol	83.67	73.03
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	14.58	70.42
CDX90199	Canola	cytosol, mitochondrion, plastid	17.2	66.29
KRG99586	Soybean	cytosol, mitochondrion, plastid	60.64	62.46
CDY21194	Canola	cytosol	21.87	55.56
CDY19659	Canola	cytosol	21.87	55.56
CDX95225	Canola	cytosol	21.87	55.56
VIT_10s0116g00060.t01	Wine grape	plasma membrane	60.64	47.17
VIT_06s0004g07410.t01	Wine grape	cytosol	9.91	37.36
TraesCS4B01G237800.1	Wheat	cytosol	16.04	35.71
TraesCS1B01G262900.1	Wheat	cytosol	15.74	35.06
TraesCS1B01G385800.1	Wheat	cytosol	15.74	35.06
TraesCS4B01G146100.1	Wheat	cytosol	15.74	35.06
TraesCS3B01G013700.1	Wheat	cytosol	15.45	34.42
TraesCS3B01G122100.1	Wheat	mitochondrion	7.87	25.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	16.04	19.3
Solyc07g032420.1.1	Tomato	cytosol	2.04	3.76

Protein Annotations

EnsemblPlants:TraesCS1B01G405900.1	EnsemblPlantsGene:TraesCS1B01G405900	Gene3D:1.10.645.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287
GO:GO:0055114	InterPro:IPR038290	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PANTHER:PTHR11993
PANTHER:PTHR11993:SF27	PFAM:PF00346	SUPFAM:SSF56762	MapMan:1.1.8.1.2.1	:	:

Description

No Description!

Coordinates

chr1B:-:633730892..633732073

Molecular Weight (calculated)

40389.1 Da

IEP (calculated)

6.329

GRAVY (calculated)

-0.232

Length

343 amino acids

Sequence
(BLAST)

001: MEKIAENRTI IQYLPYVTRW DYLATMFTEA ITVNAPKFLE NIQIPQRASY IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREL IYDLFEAATG
101: MRMMHNNFRI GGVAADLPYG WIEKCLDFCD YFLHRVVEYQ QLITQNPIFL ERVEGVGFIS REEAVNWGLS GPMLRASGIQ WDLRKVDPYE SYNQFDWKVQ
201: WQKEGDSLAR YLVRVGEMRE SIKIIQQAVE KIPGGPYENL EVRRFKKEKN SEWNDLEYKF IGKKPSPNFE LSRQELYVRV EAPKGELGIY LVGDDSLFPW
301: RWKIRPPRFI NLQILPQLVK NMKLADIMTI LSSIDIIMGE VDR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.