Factsheet for VIT_06s0004g07410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21194	Canola	cytosol	76.92	51.85
CDY19659	Canola	cytosol	76.92	51.85
CDX95225	Canola	cytosol	76.92	51.85
KRG99586	Soybean	cytosol, mitochondrion, plastid	80.22	21.92
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	84.62	19.64
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	83.52	19.39
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	83.52	19.34
AGP50801	Barley	cytosol	78.02	19.19
GRMZM5G853723_P01	Maize	plastid	82.42	19.08
CAA33911	Rice	mitochondrion, plastid	80.22	18.58
TraesCS2D01G243700.1	Wheat	plastid	80.22	18.58
HORVU0Hr1G036480.1	Barley	cytosol, mitochondrion, plastid	79.12	18.32
CDY03033	Canola	plastid	78.02	18.07
ATCG01110.1	Thale cress	cytosol	78.02	18.07
HORVU0Hr1G024830.2	Barley	cytosol	74.73	17.3
TraesCS1B01G405900.1	Wheat	cytosol	37.36	9.91
VIT_00s0246g00080.t01	Wine grape	cytosol, mitochondrion, nucleus	12.09	3.69
VIT_00s0332g00160.t01	Wine grape	cytosol, mitochondrion, nucleus	12.09	3.68
HORVU1Hr1G048080.1	Barley	cytosol	12.09	3.46
HORVU5Hr1G005410.1	Barley	cytosol, plastid	9.89	2.58
VIT_10s0116g00060.t01	Wine grape	plasma membrane	12.09	2.49
HORVU6Hr1G037410.1	Barley	extracellular	1.1	0.35
PGSC0003DMT400022652	Potato	mitochondrion	0.0	0.0
Solyc07g032420.1.1	Tomato	cytosol	0.0	0.0
HORVU4Hr1G027710.1	Barley	mitochondrion	0.0	0.0
CDY21195	Canola	cytosol	0.0	0.0
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	0.0	0.0
CDY19660	Canola	cytosol	0.0	0.0
CDX95226	Canola	cytosol	0.0	0.0
CDX90199	Canola	cytosol, mitochondrion, plastid	0.0	0.0
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_06s0004g07410	EMBL:FN594951	EnsemblPlants:VIT_06s0004g07410.t01	EnsemblPlantsGene:VIT_06s0004g07410	Gene3D:1.10.645.20	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0055114	InterPro:IPR038290
InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NADH_UbQ_OxRdtase_49kDa_CS	InterPro:NiFe-Hase_large	PANTHER:PTHR11993	ProteinID:CCB43440	ProteinID:CCB43440.1
ScanProsite:PS00535	SUPFAM:SSF56762	UniParc:UPI00021080A4	UniProt:F6GUI6	MapMan:35.1	:

Description

No Description!

Coordinates

chr6:+:8167277..8168175

Molecular Weight (calculated)

10621.9 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.029

Length

91 amino acids

Sequence
(BLAST)

1: MNVPTTREDL MIVNMGSHHP SMHGVLRLIV TLDGEDVIDY EPILGYLHRG MEKIAENRTI IQYLPYVTHW DYLATMFIEA ITINAPEYRL Y

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.