Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0332g00160.t01 | Wine grape | cytosol, mitochondrion, nucleus | 51.01 | 50.84 |
| HORVU3Hr1G004810.3 | Barley | cytosol | 26.17 | 41.27 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 26.51 | 27.72 |
| VIT_10s0116g00060.t01 | Wine grape | plasma membrane | 20.81 | 14.06 |
| VIT_06s0004g07410.t01 | Wine grape | cytosol | 3.69 | 12.09 |
| Solyc12g035590.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.645.20 | MapMan:35.1 | ProteinID:CCB55902 | ProteinID:CCB55902.1 | UniProt:F6HMJ7 | EMBL:FN595993 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016651 | GO:GO:0048038 | GO:GO:0051287 | GO:GO:0055114 | InterPro:IPR038290 | InterPro:NADH_Q_OxRdtase_suD |
| InterPro:NADH_Q_OxRdtase_suD_sf | InterPro:NiFe-Hase_large | PFAM:PF00346 | PANTHER:PTHR11993 | PANTHER:PTHR11993:SF10 | SUPFAM:SSF56762 |
| UniParc:UPI000210A44B | ArrayExpress:VIT_00s0246g00080 | EnsemblPlantsGene:VIT_00s0246g00080 | EnsemblPlants:VIT_00s0246g00080.t01 | : | : |
Description
No Description!
Coordinates
chrUn:-:17123309..17125762
Molecular Weight (calculated)
33756.8 Da
IEP (calculated)
8.543
GRAVY (calculated)
-0.235
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVIYDQAGR NDQGEVGLLL KHFLSLKRRP AFNTSCYVTL FVVRSVVDPI YVSTMAQEHA HSSAVERLLN CEVPLRAQYI RVLFREITRI SNHSLALTTH
101: AMDVGASTPS LWASEEREKL LEFYERVSGA RMHASFIRPG GVAQDLPLGL CHVTCTELVA DWAFSLIKAD PLAFLLSKSR SNRACPSPYP LCLGAGSAQE
201: RPVLWWYGRH GLRERVCWDS RRAAPYDVHD QSDPDVPVGT RGDRYDRYCI RIEEMRQSVR IIVQCPNQMP SGMIKADDRK LCPPSRCRMK LSMESCAV
101: AMDVGASTPS LWASEEREKL LEFYERVSGA RMHASFIRPG GVAQDLPLGL CHVTCTELVA DWAFSLIKAD PLAFLLSKSR SNRACPSPYP LCLGAGSAQE
201: RPVLWWYGRH GLRERVCWDS RRAAPYDVHD QSDPDVPVGT RGDRYDRYCI RIEEMRQSVR IIVQCPNQMP SGMIKADDRK LCPPSRCRMK LSMESCAV
001: MTTRKRQIKN FTSNFGPQHP AAHGVSRLVL EMNGEVVERA EPHIGSLHRG TEKLIEYKTY LQALPYSDRS DYVSMMAQEH AHSSAVEKLL NCEVPLRAQY
101: IRVLFREITR ISNHSLALTT HAMDVGALTP FLWAFEEREK LLEFYERVSG ARMHASFIRP GGVAQDLPLG LCRDIDSFTQ QFASRIDELE EMSTGNRIWK
201: QRLVDIGTVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SLRIIVQCLN QMPSGMIKAD DRKLCPPSRC
301: RMKLSMESSI HHFELYTEGF SVPASSTYTA VEAPKGEFGV FLVSNGSNRP YRRKIRAPGS AHSQGLDSMS KHHMPADVVT IIGTQDIVFG EVDR
101: IRVLFREITR ISNHSLALTT HAMDVGALTP FLWAFEEREK LLEFYERVSG ARMHASFIRP GGVAQDLPLG LCRDIDSFTQ QFASRIDELE EMSTGNRIWK
201: QRLVDIGTVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SLRIIVQCLN QMPSGMIKAD DRKLCPPSRC
301: RMKLSMESSI HHFELYTEGF SVPASSTYTA VEAPKGEFGV FLVSNGSNRP YRRKIRAPGS AHSQGLDSMS KHHMPADVVT IIGTQDIVFG EVDR
Arabidopsis Description
NAD7Nad7 [Source:UniProtKB/TrEMBL;Acc:G1C2X4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.