Factsheet for VIT_00s0332g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G269100.1	Wheat	cytosol	44.82	95.04
TraesCS4D01G138800.1	Wheat	cytosol	47.83	92.86
TraesCS1D01G258400.1	Wheat	cytosol	47.83	92.86
Zm00001d040819_P001	Maize	cytosol	47.49	92.21
TraesCS4A01G069400.1	Wheat	cytosol	47.49	92.21
TraesCS1A01G156900.1	Wheat	cytosol	47.49	92.21
TraesCS1B01G262900.1	Wheat	cytosol	47.49	92.21
TraesCS3B01G013700.1	Wheat	cytosol	47.16	91.56
TraesCSU01G157900.1	Wheat	cytosol	47.16	91.56
TraesCS7D01G075700.1	Wheat	cytosol	47.16	91.56
TraesCS4B01G146100.1	Wheat	cytosol	47.16	91.56
TraesCS1B01G385800.1	Wheat	cytosol	47.16	91.56
TraesCS7A01G526400.1	Wheat	cytosol	46.82	90.91
TraesCS7A01G387700.1	Wheat	cytosol	46.82	90.91
TraesCS4B01G237800.1	Wheat	cytosol	46.49	90.26
TraesCS4D01G160900.1	Wheat	cytosol	34.11	89.47
HORVU6Hr1G040930.1	Barley	cytosol, mitochondrion, nucleus	45.82	88.96
Solyc01g065770.1.1	Tomato	mitochondrion	33.78	80.16
OQU91808	Sorghum	cytosol	17.06	75.0
HORVU5Hr1G042630.1	Barley	cytosol	46.82	66.67
HORVU4Hr1G059530.1	Barley	mitochondrion	49.5	61.92
KRH15676	Soybean	mitochondrion	36.12	54.82
VIT_00s0246g00080.t01	Wine grape	cytosol, mitochondrion, nucleus	50.84	51.01
ATMG00510.1	Thale cress	mitochondrion	66.22	50.25
PGSC0003DMT400074912	Potato	cytosol	25.08	44.64
CDY65733	Canola	cytosol	49.5	23.68
VIT_10s0116g00060.t01	Wine grape	plasma membrane	18.73	12.7
VIT_06s0004g07410.t01	Wine grape	cytosol	3.68	12.09

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	ProteinID:CCB57597	ProteinID:CCB57597.1	UniProt:F6HSD8	EMBL:FN596244
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016651	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	InterPro:NADH_Q_OxRdtase_suD
InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	PANTHER:PTHR11993	PANTHER:PTHR11993:SF10	SUPFAM:SSF56762
UniParc:UPI00021096A8	ArrayExpress:VIT_00s0332g00160	EnsemblPlantsGene:VIT_00s0332g00160	EnsemblPlants:VIT_00s0332g00160.t01	SEG:seg	:

Description

No Description!

Coordinates

chrUn:-:23746339..23749942

Molecular Weight (calculated)

34062.6 Da

IEP (calculated)

10.481

GRAVY (calculated)

-0.217

Length

299 amino acids

Sequence
(BLAST)

001: MRVIYDQAGR NDQGEVGLLL KRFLSLKRRP AFNTKPCYGF VVRSVVDPIY VSTMAQEHAH SSAVERLLNC EVPLRAQYIR VLFREITRIS NHSLALTTHA
101: MDVGASTPSL WASEEREKLL EFYERVSRAR MHASFIRPGG VAQDLPLGLC RDIDSSTQQF ASRIDGLEEM STGNRIWKQR LVDIGTVTAQ QAKDWGFSGV
201: MLRGRVPEWI AMIVTVSVSK MMRQSVRIIV QCPNQMPSGM IKADDRKLCP PSRCRMKLSM ESLRLSSHWE PQFLSSEPFL FPSPRPGIAL RFRFFGRIN

Best Arabidopsis Sequence Match ( ATMG00510.1 )
(BLAST)

001: MTTRKRQIKN FTSNFGPQHP AAHGVSRLVL EMNGEVVERA EPHIGSLHRG TEKLIEYKTY LQALPYSDRS DYVSMMAQEH AHSSAVEKLL NCEVPLRAQY
101: IRVLFREITR ISNHSLALTT HAMDVGALTP FLWAFEEREK LLEFYERVSG ARMHASFIRP GGVAQDLPLG LCRDIDSFTQ QFASRIDELE EMSTGNRIWK
201: QRLVDIGTVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SLRIIVQCLN QMPSGMIKAD DRKLCPPSRC
301: RMKLSMESSI HHFELYTEGF SVPASSTYTA VEAPKGEFGV FLVSNGSNRP YRRKIRAPGS AHSQGLDSMS KHHMPADVVT IIGTQDIVFG EVDR

Arabidopsis Description

NAD7Nad7 [Source:UniProtKB/TrEMBL;Acc:G1C2X4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.