Factsheet for GRMZM5G853723_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 18453340
plastid: 20089766
plastid: 21196305
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G048080.1	Barley	cytosol	77.35	95.6
HORVU6Hr1G037410.1	Barley	extracellular	70.23	95.5
CAA33911	Rice	mitochondrion, plastid	94.91	94.91
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	94.66	94.9
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	94.4	94.4
HORVU0Hr1G036480.1	Barley	cytosol, mitochondrion, plastid	94.4	94.4
TraesCS2D01G243700.1	Wheat	plastid	94.15	94.15
AGP50801	Barley	cytosol	88.55	94.05
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	93.38	93.62
HORVU0Hr1G024830.2	Barley	cytosol	93.13	93.13
HORVU5Hr1G005410.1	Barley	cytosol, plastid	76.08	85.67
Solyc01g011410.1.1	Tomato	nucleus	15.78	84.93
CDX95225	Canola	cytosol	29.01	84.44
CDY19659	Canola	cytosol	29.01	84.44
CDY21194	Canola	cytosol	29.01	84.44
ATCG01110.1	Thale cress	cytosol	84.22	84.22
CDY03033	Canola	plastid	83.97	83.97
Solyc02g011810.1.1	Tomato	cytosol	11.96	83.93
CDY21195	Canola	cytosol	50.64	82.92
CDY19660	Canola	cytosol	50.64	82.92
CDX95226	Canola	cytosol	50.64	82.92
VIT_06s0004g07410.t01	Wine grape	cytosol	19.08	82.42
PGSC0003DMT400022652	Potato	mitochondrion	44.78	76.52
KRG99586	Soybean	cytosol, mitochondrion, plastid	63.61	75.08
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	12.47	69.01
CDX90199	Canola	cytosol, mitochondrion, plastid	14.76	65.17
VIT_10s0116g00060.t01	Wine grape	plasma membrane	53.94	48.07
Zm00001d040819_P001	Maize	cytosol	14.5	37.01
GRMZM5G856027_P02	Maize	cytosol, mitochondrion, peroxisome, plastid	31.81	31.73
Zm00001d046260_P002	Maize	mitochondrion	31.81	31.73
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	15.01	20.7
Solyc07g032420.1.1	Tomato	cytosol	1.78	3.76

Protein Annotations

MapMan:1.1.8.1.2.1	Gene3D:1.10.645.20	EntrezGene:845187	ProteinID:CAA39868.1	ProteinID:CAA60354.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287
GO:GO:0055114	EnsemblPlantsGene:GRMZM5G853723	EnsemblPlants:GRMZM5G853723_P01	EnsemblPlants:GRMZM5G853723_T01	InterPro:IPR038290	HAMAP:MF_01358
InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NADH_UbQ_OxRdtase_49kDa_CS	InterPro:NDH1_su_D/H	InterPro:NiFe-Hase_large	UniProt:P25709
PFAM:PF00346	ScanProsite:PS00535	PANTHER:PTHR11993	SUPFAM:SSF56762	TIGRFAMs:TIGR01962	UniParc:UPI00001308B7

Description

ndhHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25709]

Coordinates

chrPt:-:116456..117637

Molecular Weight (calculated)

45689.8 Da

IEP (calculated)

5.555

GRAVY (calculated)

-0.154

Length

393 amino acids

Sequence
(BLAST)

001: MSLSLKRKDL MIVNMGPQHP SMHGVLRLIV TLDGEDVIDC EPILGYLHRG MEKIAENRSI IQYLPYVTRW DYLATMFTEA ITVNAPEFLE NIQIPKRASY
101: IRVIMLELSR IASHLLWLGP FMADLGAQTP FFYIFREREL IYDLFEAVTG MRMMHNYFRI GGVAADLPYG WMDKCLDFCD YFLQGVVEYQ ELITQNPIFL
201: ERVEGVGFIS GEEAVNWGLS GPMLRASGIQ WDLRKIDPYE SYNQFDWKVQ WQKEGDSLAR YLVRVGEMRE SIKIIQQAVE KIPGGPYENL EARRFKKAKN
301: PEWNDFEYRF LGKKPSPNFE LSKQELYVRV EAPKGELGIY LVGDDSLFPW RWKIRPPGFI NLQILPQLVK KMKLADIMTI LGSIDIIMGE VDR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.