Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g005880.1.1 | Tomato | cytosol | 97.65 | 98.81 |
| KRH68191 | Soybean | cytosol | 82.35 | 85.37 |
| KRG96447 | Soybean | cytosol | 80.0 | 82.93 |
| AT3G62790.1 | Thale cress | cytosol | 80.0 | 81.93 |
| Bra007701.1-P | Field mustard | cytosol | 78.82 | 80.72 |
| CDX76662 | Canola | cytosol | 78.82 | 80.72 |
| CDY11448 | Canola | cytosol | 78.82 | 80.72 |
| CDY53012 | Canola | cytosol | 78.82 | 80.72 |
| CDX80126 | Canola | cytosol | 77.65 | 79.52 |
| VIT_05s0077g02340.t01 | Wine grape | cytosol | 77.65 | 75.86 |
| CDX67904 | Canola | cytosol | 75.29 | 75.29 |
| EES15199 | Sorghum | cytosol | 75.29 | 74.42 |
| HORVU7Hr1G058490.1 | Barley | cytosol | 74.12 | 73.26 |
| TraesCS7A01G277200.1 | Wheat | cytosol | 74.12 | 73.26 |
| TraesCS7B01G174900.1 | Wheat | cytosol | 74.12 | 73.26 |
| TraesCS7D01G277200.1 | Wheat | cytosol | 74.12 | 73.26 |
| Zm00001d031975_P001 | Maize | mitochondrion | 74.12 | 73.26 |
| CDY25118 | Canola | cytosol | 71.76 | 70.93 |
| Os08t0556600-01 | Rice | plastid | 74.12 | 70.0 |
| Bra004437.1-P | Field mustard | cytosol | 76.47 | 59.09 |
| AT2G47690.1 | Thale cress | cytosol | 80.0 | 57.63 |
| Bra003510.1-P | Field mustard | cytosol | 72.94 | 46.62 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 43.53 | 37.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073819 | EnsemblPlantsGene:PGSC0003DMG400028681 | EntrezGene:102580631 | InterPro:NADH_UbQ_OxRdtase_FeS-su5 | ncoils:Coil | PANTHER:PTHR15224 |
| PFAM:PF10200 | PFscan:PS51808 | PGSC:PGSC0003DMG400028681 | RefSeq:XP_006350968.1 | SEG:seg | UniParc:UPI0002951595 |
| UniProt:M1CSQ3 | MapMan:2.4.1.4.4 | : | : | : | : |
Description
NADH-ubiquinone oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400028681]
Coordinates
chr11:+:6791412..6796813
Molecular Weight (calculated)
9946.7 Da
IEP (calculated)
8.490
GRAVY (calculated)
-1.179
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MASGWGITGN KGRCYDFWMD FSECMSRCRE PKDCVLLRED YFECLHHSKE YQRRNRIYKE EQRQLRAASQ KKKEGVDGGG GGGHH
1: MASGWGITGN KGRCYDFWMD FSECMSHCRE PKDCTLLRED YLECLHHSKE FQRRNRIYKE EQRKLRAASR KGEETGDGTH THH
Arabidopsis Description
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZI6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.