Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15199 | Sorghum | cytosol | 86.67 | 90.7 |
| Zm00001d031975_P001 | Maize | mitochondrion | 85.56 | 89.53 |
| TraesCS7D01G277200.1 | Wheat | cytosol | 85.56 | 89.53 |
| TraesCS7B01G174900.1 | Wheat | cytosol | 85.56 | 89.53 |
| TraesCS7A01G277200.1 | Wheat | cytosol | 85.56 | 89.53 |
| HORVU7Hr1G058490.1 | Barley | cytosol | 85.56 | 89.53 |
| KRH68191 | Soybean | cytosol | 73.33 | 80.49 |
| CDX76662 | Canola | cytosol | 73.33 | 79.52 |
| CDY11448 | Canola | cytosol | 73.33 | 79.52 |
| Bra007701.1-P | Field mustard | cytosol | 73.33 | 79.52 |
| KRG96447 | Soybean | cytosol | 72.22 | 79.27 |
| AT3G62790.1 | Thale cress | cytosol | 72.22 | 78.31 |
| CDY53012 | Canola | cytosol | 71.11 | 77.11 |
| CDX80126 | Canola | cytosol | 70.0 | 75.9 |
| Solyc11g005880.1.1 | Tomato | cytosol | 70.0 | 75.0 |
| PGSC0003DMT400073819 | Potato | cytosol | 70.0 | 74.12 |
| VIT_05s0077g02340.t01 | Wine grape | cytosol | 71.11 | 73.56 |
| GSMUA_Achr11P... | Banana | cytosol | 67.78 | 72.62 |
| CDX67904 | Canola | cytosol | 66.67 | 70.59 |
| CDY25118 | Canola | cytosol | 65.56 | 68.6 |
| Bra004437.1-P | Field mustard | cytosol | 71.11 | 58.18 |
| AT2G47690.1 | Thale cress | cytosol | 72.22 | 55.08 |
| Bra003510.1-P | Field mustard | cytosol | 64.44 | 43.61 |
Protein Annotations
| MapMan:2.4.1.4.4 | EntrezGene:4346289 | EMBL:AK121358 | ProteinID:BAD09075.1 | ProteinID:BAF24391.1 | ProteinID:BAT06654.1 |
| ncoils:Coil | ProteinID:EAZ43629.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005747 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0032981 | InterPro:NADH_UbQ_OxRdtase_FeS-su5 | EnsemblPlantsGene:Os08g0556600 | EnsemblPlants:Os08t0556600-01 | PFAM:PF10200 | PANTHER:PTHR15224 |
| UniProt:Q6ZJ19 | UniParc:UPI000023ACF5 | RefSeq:XP_015650271.1 | SEG:seg | : | : |
Description
Similar to Fb14. (Os08t0556600-01)
Coordinates
chr8:+:27856840..27858391
Molecular Weight (calculated)
10591.5 Da
IEP (calculated)
8.763
GRAVY (calculated)
-1.057
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MASGWGINGN KGRCYDFWLD FSECMSRCRQ PTDCGLLRED YLECLHHSKE FQRRNRIYKE EQRKLRAAIR RREEAAKEKA EGAPAVSAQH
001: MDISGHPKTR TRTIFDEVDE PVWFCCVLPI WVGEEMASGW GITGNKGRCY DFWMDFSECM SHCREPKDCT LLREDYLECL HHSKEFQRRN RIYKEEQRKL
101: RAASRKGEEA GDGTHNHH
101: RAASRKGEEA GDGTHNHH
Arabidopsis Description
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A [Source:UniProtKB/Swiss-Prot;Acc:O82238]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.