Factsheet for Solyc10g079470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 5
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g022750.2.1
Solyc01g109620.2.1
Solyc02g085540.1.1
Solyc02g087240.2.1
Solyc02g092270.2.1
Solyc03g007660.2.1
Solyc03g019720.2.1
Solyc03g061580.1.1
Solyc03g096940.2.1
Solyc04g008490.1.1
Solyc05g023920.1.1
Solyc05g046390.2.1
Solyc06g036350.2.1
Solyc07g042310.1.1
Solyc07g065280.2.1
Solyc08g065620.1.1
Solyc09g009360.1.1
Solyc09g059220.1.1
Solyc09g064450.2.1
Solyc09g065830.2.1
Solyc10g005230.2.1
Solyc10g018950.1.1
Solyc10g051350.1.1
Solyc11g005880.1.1
Solyc11g070030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	Solyc01g109620.2.1	AT1G79010.1	12837548
AT3G47930.1	Solyc10g051350.1.1	AT1G79010.1	12837548
AT3G47930.1	Solyc04g008490.1.1	AT2G02050.1	12837548
AT3G47930.1	Solyc09g064450.2.1	AT2G20360.1	12837548
AT3G47930.1	Solyc05g046390.2.1	AT2G31490.1	12837548
AT3G47930.1	Solyc09g059220.1.1	AT2G31490.1	12837548
AT3G47930.1	Solyc02g085540.1.1	AT2G42310.1	12837548
AT3G47930.1	Solyc11g005880.1.1	AT2G47690.1	12837548
AT3G47930.1	Solyc03g096940.2.1	AT3G03100.1	12837548
AT3G47930.1	Solyc01g022750.2.1	AT3G12260.1	12837548
AT3G47930.1	Solyc03g019720.2.1	AT3G48680.1	12837548
AT3G47930.1	Solyc02g085540.1.1	AT3G57785.1	12837548
AT3G47930.1	Solyc09g065830.2.1	AT4G02580.1	12837548
AT3G47930.1	Solyc07g065280.2.1	AT4G16450.1	12837548
AT3G47930.1	Solyc10g005230.2.1	AT4G20150.1	12837548
AT3G47930.1	Solyc02g087240.2.1	AT5G08530.1	12837548
AT3G47930.1	Solyc11g070030.1.1	AT5G11770.1	12837548
AT3G47930.1	Solyc03g007660.2.1	AT5G52840.1	12837548
AT3G47930.1	Solyc06g036350.2.1	AT5G52840.1	12837548
AT3G47930.1	Solyc02g092270.2.1	AT5G67590.1	12837548
AT3G47930.1	Solyc08g065620.1.1	ATMG00070.1	12837548
AT3G47930.1	Solyc07g042310.1.1	ATMG00510.1	12837548
AT3G47930.1	Solyc09g009360.1.1	ATMG00510.1	12837548
AT3G47930.1	Solyc03g061580.1.1	ATMG00513.1	12837548
AT3G47930.1	Solyc10g018950.1.1	ATMG01120.1	12837548
AT3G47930.1	Solyc05g023920.1.1	ATMG01275.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020997	Potato	mitochondrion	95.75	95.59
VIT_08s0007g05710.t01	Wine grape	mitochondrion	79.93	77.18
KRH71746	Soybean	mitochondrion	74.32	74.83
CDY24145	Canola	mitochondrion	74.15	72.67
Bra018100.1-P	Field mustard	mitochondrion	74.15	72.55
CDY36916	Canola	mitochondrion	74.15	72.55
AT3G47930.1	Thale cress	mitochondrion	73.98	71.31
KXG27706	Sorghum	mitochondrion	70.07	70.43
Os11t0143500-01	Rice	mitochondrion	69.56	70.15
TraesCS5B01G132600.1	Wheat	plastid	69.56	70.03
TraesCS5D01G140400.2	Wheat	mitochondrion	69.39	69.86
Os12t0139600-01	Rice	mitochondrion	69.22	69.81
HORVU5Hr1G043060.2	Barley	mitochondrion	68.88	69.35
KRH33172	Soybean	mitochondrion	67.86	68.44
TraesCS5A01G132300.2	Wheat	mitochondrion	68.88	65.75
GSMUA_Achr6P21390_001	Banana	cytosol	46.43	62.19
Zm00001d004956_P001	Maize	mitochondrion	70.58	45.91

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	Gene3D:3.30.43.10	Gene3D:3.30.465.10	InterPro:ALO	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	InterPro:FAD_lactone_oxidase	InterPro:GL_DH	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003885	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0016020
GO:GO:0016491	GO:GO:0016614	GO:GO:0016633	GO:GO:0016899	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	GO:GO:0080049	InterPro:IPR016166	InterPro:IPR016167	UniProt:K4D2I8	InterPro:Oxid_FAD_bind_N
PFAM:PF01565	PFAM:PF04030	PIRSF:PIRSF000136	PFscan:PS51387	PANTHER:PTHR43762	PANTHER:PTHR43762:SF1
SUPFAM:SSF56176	EnsemblPlantsGene:Solyc10g079470.2	EnsemblPlants:Solyc10g079470.2.1	TIGRFAMs:TIGR01676	UniParc:UPI000276A898	SEG:seg

Description

L-galactono-1,4-lactone dehydrogenase, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G47930) UniProtKB/Swiss-Prot;Acc:Q9SU56]

Coordinates

chr10:-:61016680..61024289

Molecular Weight (calculated)

66898.1 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.493

Length

588 amino acids

Sequence
(BLAST)

001: MLRSFASKRS LQSLLHHHYR RCRQNPQFPI FNPRPFSSSP GPPSSDAELR KYIGYTLLLL GSAAATYYSF PFSEDARDKK AQLFRYAPLP DDLHTVSNWS
101: GTHEVRTRTF LQPESVEELE GIVKEANVRK HKIRPVGSGL SPNGIGLTRA GMVNLALMDK VLSVDKENKR VTVQAGIRVQ QLVDEIKEFG ITLQNFASIR
201: EQQIGGIVQV GAHGTGARLP PIDEQVISMK VVTPAKGTIE ISKEKDPELF YLARCGLGGL GVVAEVTLQC VERQELVEHT FLSNMKDIKK NHKKFLSENK
301: HVKYLYIPYT DAVVVVTCNP MSKEKGPPKN KPKYTAEEAL QHVRDLYLES LTKYRDSGSP SEPEIVELSF TELRDKLLAM DPLNKEHVIK VNKAEAEYWR
401: KSEGYRVGWS DEILGFDCGG HQWVSETCFP AGTLSKPSMK DLEYIEELMQ LIEKESVPAP APIEQRWTAC SKSRMSPAYS SADDDIFSWV GIIMYLPTMD
501: ARQRRQITEE FFHYRHMTQS QLWDQYSAFE HWAKIEVPKD KEELAALQAR LKKKFPVDAY NQARKELDPN RILSNNMLEK LFPSSEAV

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.