Factsheet for Solyc05g023920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G07785.1	Thale cress	golgi, mitochondrion, plastid, vacuole	78.79	78.79
VIT_00s0396g00020.t01	Wine grape	plastid	77.78	77.78
HORVU4Hr1G052660.1	Barley	golgi, mitochondrion, vacuole	79.8	77.45
HORVU2Hr1G004300.1	Barley	golgi, mitochondrion, plastid, vacuole	78.79	76.47
HORVU6Hr1G039110.1	Barley	extracellular, golgi, vacuole	25.25	71.43
TraesCS4A01G360300.1	Wheat	golgi, mitochondrion, vacuole	75.76	70.09
HORVU3Hr1G044940.1	Barley	endoplasmic reticulum, extracellular, vacuole	38.38	66.67
HORVU0Hr1G019930.1	Barley	golgi, mitochondrion, vacuole	79.8	64.23
GSMUA_AchrUn_...	Banana	golgi	78.79	63.41
ATMG01275.1	Thale cress	endoplasmic reticulum	78.79	60.47
TraesCS3B01G013800.1	Wheat	golgi, mitochondrion, vacuole	79.8	54.86
TraesCSU01G180100.1	Wheat	golgi, mitochondrion, vacuole	79.8	54.86
TraesCSU01G173300.1	Wheat	golgi, mitochondrion, vacuole	79.8	54.86
TraesCS7B01G486900.1	Wheat	golgi, mitochondrion, vacuole	79.8	54.86
TraesCS5B01G339500.1	Wheat	mitochondrion	79.8	54.86
TraesCS3D01G173600.1	Wheat	golgi, mitochondrion, vacuole	79.8	54.86
TraesCS6B01G338500.1	Wheat	endoplasmic reticulum, golgi, vacuole	78.79	54.17
TraesCS6A01G397300.1	Wheat	endoplasmic reticulum, golgi, vacuole	78.79	54.17
TraesCS1A01G098600.1	Wheat	mitochondrion	77.78	53.47
TraesCS7A01G388200.1	Wheat	golgi	77.78	53.47
TraesCS4A01G069900.1	Wheat	golgi, mitochondrion, vacuole	79.8	49.07
TraesCS3A01G456900.1	Wheat	golgi, mitochondrion, vacuole	78.79	48.45
TraesCS6A01G114500.1	Wheat	mitochondrion	78.79	48.45
TraesCS4B01G117500.1	Wheat	golgi, mitochondrion, vacuole	78.79	48.45
CDY36712	Canola	golgi, mitochondrion, nucleus, plastid	77.78	48.43
CDY45488	Canola	golgi, mitochondrion, nucleus, plastid	77.78	48.43
TraesCS4A01G360600.1	Wheat	mitochondrion	77.78	48.12
TraesCS1D01G258700.1	Wheat	mitochondrion	77.78	47.83
TraesCS5D01G214900.1	Wheat	mitochondrion	77.78	47.83
TraesCS5B01G030900.1	Wheat	mitochondrion	77.78	47.83
TraesCS4D01G138500.1	Wheat	mitochondrion	77.78	47.83
TraesCS2D01G247600.1	Wheat	golgi, mitochondrion, vacuole	77.78	47.83
TraesCS4A01G360500.1	Wheat	golgi, mitochondrion, vacuole	76.77	47.5
TraesCS2B01G064500.1	Wheat	golgi, mitochondrion, vacuole	76.77	47.5
TraesCS7A01G080700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	76.77	47.2
Zm00001d046083_P001	Maize	mitochondrion	76.77	47.2
BAC19852	Rice	plasma membrane	80.81	24.62
Solyc02g011800.1.1	Tomato	plasma membrane	19.19	13.87
Solyc02g011790.1.1	Tomato	extracellular, plasma membrane, vacuole	13.13	10.08
Solyc11g021230.1.1	Tomato	plastid	3.03	1.6
Solyc02g080280.1.1	Tomato	mitochondrion, plasma membrane, plastid	1.01	0.53
Solyc11g050760.1.1	Tomato	peroxisome, plastid, vacuole	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0045333
GO:GO:0055114	UniProt:K4BZN0	InterPro:NADH_UbQ_OxRdtase_su1/FPO	PFAM:PF00146	PANTHER:PTHR11432	PANTHER:PTHR11432:SF3
EnsemblPlantsGene:Solyc05g023920.1	EnsemblPlants:Solyc05g023920.1.1	TMHMM:TMhelix	UniParc:UPI00027658E7	:	:

Description

No Description!

Coordinates

chr5:-:30116238..30116537

Molecular Weight (calculated)

10847.4 Da

IEP (calculated)

8.951

GRAVY (calculated)

0.640

Length

99 amino acids

Sequence
(BLAST)

1: MDFVQRRKGS DLVGSFGLLQ PLEYGLKFIL KEPISPSSAN FSLFIMTPVA TFMLSLVVRS IVPFGYGMVL SNPSIGLLYL FAISSVDFYG NIIAGWSSN

Best Arabidopsis Sequence Match ( ATMG01275.1 )
(BLAST)

001: TYIAVPAEIL GIILPLLLGV AFLVLAERKV MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL
101: SDPNIGLLYL FAISSLGVYG IIIAGRSSN

Arabidopsis Description

NAD1ANADH dehydrogenase 1A [Source:TAIR;Acc:ATMG01275]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.