Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G114500.1 | Wheat | mitochondrion | 95.65 | 95.65 |
| TraesCSU01G180100.1 | Wheat | golgi, mitochondrion, vacuole | 84.47 | 94.44 |
| TraesCS3D01G173600.1 | Wheat | golgi, mitochondrion, vacuole | 84.47 | 94.44 |
| TraesCS1D01G258700.1 | Wheat | mitochondrion | 93.79 | 93.79 |
| TraesCS2D01G247600.1 | Wheat | golgi, mitochondrion, vacuole | 93.79 | 93.79 |
| TraesCS4B01G117500.1 | Wheat | golgi, mitochondrion, vacuole | 93.17 | 93.17 |
| Zm00001d046083_P001 | Maize | mitochondrion | 92.55 | 92.55 |
| TraesCS5D01G214900.1 | Wheat | mitochondrion | 92.55 | 92.55 |
| AT2G07785.1 | Thale cress | golgi, mitochondrion, plastid, vacuole | 55.9 | 90.91 |
| VIT_00s0396g00020.t01 | Wine grape | plastid | 55.28 | 89.9 |
| GSMUA_AchrUn_... | Banana | golgi | 62.73 | 82.11 |
| Solyc05g023920.1.1 | Tomato | plastid | 47.83 | 77.78 |
| ATMG01275.1 | Thale cress | endoplasmic reticulum | 55.9 | 69.77 |
| CDY45488 | Canola | golgi, mitochondrion, nucleus, plastid | 63.98 | 64.78 |
| CDY36712 | Canola | golgi, mitochondrion, nucleus, plastid | 63.98 | 64.78 |
| BAC19852 | Rice | plasma membrane | 65.84 | 32.62 |
| TraesCS2D01G228400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 24.22 | 24.22 |
| TraesCS2D01G557100.1 | Wheat | plastid | 27.33 | 23.53 |
| TraesCS2D01G243600.1 | Wheat | extracellular, golgi | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G138500.1 | EnsemblPlantsGene:TraesCS4D01G138500 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0055114 | InterPro:NADH_UbQ_OxRdtase_su1/FPO | InterPro:NADH_UbQ_OxRdtase_su1_CS | PANTHER:PTHR11432 | PANTHER:PTHR11432:SF3 | PFAM:PF00146 |
| ScanProsite:PS00667 | SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4D:+:123424714..123425200
Molecular Weight (calculated)
17640.7 Da
IEP (calculated)
10.964
GRAVY (calculated)
0.339
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFVQRRKGL DVVGSFGLLQ PLADGLKLIL KEPISPSSAN FSLFRMALVA TFMSSLVTWA VVPFDYGMVL SDPNIGLLYL FAISSLGVYG IIIAGWSSKT
101: RGGRSVAYDI RTNWSKWVCA AGVERSTLRR CGLTGLGLIN PFFHSSRGRS LFRAGIEKWK S
101: RGGRSVAYDI RTNWSKWVCA AGVERSTLRR CGLTGLGLIN PFFHSSRGRS LFRAGIEKWK S
1: MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL SDPNIGLLYL FAISSLGVYG IIIAGRSSN
Arabidopsis Description
NADH dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q3EC42]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.