CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	endoplasmic reticulum

plastid: 27992503
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G052660.1	Barley	golgi, mitochondrion, vacuole	30.15	96.08
AT2G07785.1	Thale cress	golgi, mitochondrion, plastid, vacuole	29.23	95.96
ATMG01275.1	Thale cress	endoplasmic reticulum	37.85	95.35
VIT_00s0396g00020.t01	Wine grape	plastid	28.92	94.95
HORVU0Hr1G019930.1	Barley	golgi, mitochondrion, vacuole	30.77	81.3
Solyc05g023920.1.1	Tomato	plastid	24.62	80.81
GSMUA_AchrUn_...	Banana	golgi	29.54	78.05
TraesCSU01G173300.1	Wheat	golgi, mitochondrion, vacuole	32.62	73.61
TraesCS7B01G486900.1	Wheat	golgi, mitochondrion, vacuole	32.62	73.61
TraesCS3B01G013800.1	Wheat	golgi, mitochondrion, vacuole	32.62	73.61
TraesCS3D01G173600.1	Wheat	golgi, mitochondrion, vacuole	32.62	73.61
TraesCSU01G180100.1	Wheat	golgi, mitochondrion, vacuole	32.62	73.61
TraesCS1A01G098600.1	Wheat	mitochondrion	32.0	72.22
TraesCS7A01G388200.1	Wheat	golgi	32.0	72.22
TraesCS5B01G339500.1	Wheat	mitochondrion	32.0	72.22
TraesCS6A01G397300.1	Wheat	endoplasmic reticulum, golgi, vacuole	31.69	71.53
TraesCS4A01G069900.1	Wheat	golgi, mitochondrion, vacuole	33.54	67.7
TraesCS3A01G456900.1	Wheat	golgi, mitochondrion, vacuole	33.54	67.7
TraesCS6A01G114500.1	Wheat	mitochondrion	33.23	67.08
TraesCS2D01G247600.1	Wheat	golgi, mitochondrion, vacuole	33.23	67.08
TraesCS5D01G214900.1	Wheat	mitochondrion	32.92	66.46
TraesCS7A01G080700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	32.92	66.46
TraesCS2B01G064500.1	Wheat	golgi, mitochondrion, vacuole	32.62	66.25
TraesCS4D01G138500.1	Wheat	mitochondrion	32.62	65.84
TraesCS4B01G117500.1	Wheat	golgi, mitochondrion, vacuole	32.62	65.84
TraesCS5B01G030900.1	Wheat	mitochondrion	32.31	65.22
Zm00001d046083_P001	Maize	mitochondrion	32.0	64.6
CDY45488	Canola	golgi, mitochondrion, nucleus, plastid	30.46	62.26
CDY36712	Canola	golgi, mitochondrion, nucleus, plastid	30.46	62.26
CAA33910	Rice	vacuole	34.77	31.22

Protein Annotations

MapMan:2.4.1.3.1	EntrezGene:6450162	EnsemblPlants:BAC19852	EnsemblPlantsGene:BAC19852	ProteinID:BAC19852	ProteinID:BAC19852.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0005886	GO:GO:0006091	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0016651	GO:GO:0045333	GO:GO:0051539	GO:GO:0055114	HAMAP:MF_01350	InterPro:NADH_UbQ_OxRdtase_su1/FPO
InterPro:NADH_UbQ_OxRdtase_su1_CS	PFAM:PF00146	ScanProsite:PS00667	PANTHER:PTHR11432	PANTHER:PTHR11432:SF3	UniProt:Q8HCR7
Reactome:R-HSA-611105	Reactome:R-HSA-6799198	TMHMM:TMhelix	UniParc:UPI00006C69F4	UniParc:UPI000C87561C	RefSeq:YP_002000548.1
SEG:seg	:	:	:	:	:

Description

nad1NADH dehydrogenase subunit 1

Coordinates

chrMt:+:11024..315294

Molecular Weight (calculated)

35567.6 Da

IEP (calculated)

8.544

GRAVY (calculated)

0.816

Length

325 amino acids

Sequence
(BLAST)

001: TYIAVPAEIL CLILPLLLGV AFLVLAERKV MAFVQRRKGP DVVGSFGLLQ PLADGLKLIL KEPISPSSAN FSLFRMAPVA TFMLSLVAWA VVPFDYGMVL
101: SDPNIGLLYL FAISSLGVYG IIIAGWSSNS KYAFLGALRS AAQMVPYEVS IGLILITVLI CVGPCNSSEI VMAQKQIWSG IPLFPVLVMF FIPCLAETNR
201: APSDLPEAEA ESVAGYNVEY SSMGSALFFL GEYANMILMS GLCTSLFPGG WPPILDLPIS KKIPCSIWFS IKVLLFLFLY IWVRAAFPRY RYDQLMGLGR
301: KVFLPLSLAR VVPVSGVSVT FRWLP

Best Arabidopsis Sequence Match ( ATMG01275.1 )
(BLAST)

001: TYIAVPAEIL GIILPLLLGV AFLVLAERKV MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL
101: SDPNIGLLYL FAISSLGVYG IIIAGRSSN

Arabidopsis Description

NAD1ANADH dehydrogenase 1A [Source:TAIR;Acc:ATMG01275]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.