Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G180100.1 | Wheat | golgi, mitochondrion, vacuole | 97.22 | 97.22 |
| TraesCS5B01G339500.1 | Wheat | mitochondrion | 97.22 | 97.22 |
| TraesCS7A01G388200.1 | Wheat | golgi | 95.83 | 95.83 |
| TraesCS1A01G098600.1 | Wheat | mitochondrion | 95.83 | 95.83 |
| AT2G07785.1 | Thale cress | golgi, mitochondrion, plastid, vacuole | 63.19 | 91.92 |
| VIT_00s0396g00020.t01 | Wine grape | plastid | 62.5 | 90.91 |
| TraesCS4A01G360300.1 | Wheat | golgi, mitochondrion, vacuole | 66.67 | 89.72 |
| TraesCS6A01G114500.1 | Wheat | mitochondrion | 95.14 | 85.09 |
| TraesCS3A01G456900.1 | Wheat | golgi, mitochondrion, vacuole | 95.14 | 85.09 |
| TraesCS7A01G080700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 94.44 | 84.47 |
| GSMUA_AchrUn_... | Banana | golgi | 71.53 | 83.74 |
| TraesCS4A01G360600.1 | Wheat | mitochondrion | 91.67 | 82.5 |
| TraesCS4A01G360500.1 | Wheat | golgi, mitochondrion, vacuole | 91.67 | 82.5 |
| Solyc05g023920.1.1 | Tomato | plastid | 54.17 | 78.79 |
| TraesCS4A01G069900.1 | Wheat | golgi, mitochondrion, vacuole | 87.5 | 78.26 |
| ATMG01275.1 | Thale cress | endoplasmic reticulum | 63.19 | 70.54 |
| CDY45488 | Canola | golgi, mitochondrion, nucleus, plastid | 72.22 | 65.41 |
| CDY36712 | Canola | golgi, mitochondrion, nucleus, plastid | 72.22 | 65.41 |
| BAC19852 | Rice | plasma membrane | 71.53 | 31.69 |
| TraesCS3A01G430400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 29.17 | 22.46 |
| TraesCS4A01G155400.1 | Wheat | extracellular, golgi | 0.0 | 0.0 |
| TraesCS5A01G056300.1 | Wheat | extracellular, plasma membrane | 0.0 | 0.0 |
| TraesCS3A01G430300.1 | Wheat | extracellular, golgi | 0.0 | 0.0 |
| TraesCS1A01G130500.1 | Wheat | extracellular, golgi | 0.0 | 0.0 |
| TraesCS7A01G290700.1 | Wheat | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G397300.1 | EnsemblPlantsGene:TraesCS6A01G397300 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0055114 | InterPro:NADH_UbQ_OxRdtase_su1/FPO | InterPro:NADH_UbQ_OxRdtase_su1_CS | PANTHER:PTHR11432 | PANTHER:PTHR11432:SF3 | PFAM:PF00146 |
| ScanProsite:PS00667 | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:608881750..608882236
Molecular Weight (calculated)
15665.4 Da
IEP (calculated)
10.631
GRAVY (calculated)
0.411
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFVQLRKGP DVVGSFGLLQ PLADGLKLIL KEPISPSSAN FSLFRMAPVA TFMLSLVAWA IVPFDYGMVL SDPNIGLLYL FAISSLGVYG IMIAGWSSKT
101: GGGRSVAYDI RTNWSKMGLG LINPFFHSSR GRSLFRAGIE KWKS
101: GGGRSVAYDI RTNWSKMGLG LINPFFHSSR GRSLFRAGIE KWKS
1: MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL SDPNIGLLYL FAISSLGVYG IIIAGRSSN
Arabidopsis Description
NADH dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q3EC42]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.