Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G114500.1 | Wheat | mitochondrion | 96.89 | 96.89 |
| TraesCS7A01G080700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 96.27 | 96.27 |
| TraesCS1A01G098600.1 | Wheat | mitochondrion | 85.71 | 95.83 |
| TraesCS7A01G388200.1 | Wheat | golgi | 85.09 | 95.14 |
| TraesCS6A01G397300.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 85.09 | 95.14 |
| AT2G07785.1 | Thale cress | golgi, mitochondrion, plastid, vacuole | 57.76 | 93.94 |
| VIT_00s0396g00020.t01 | Wine grape | plastid | 57.14 | 92.93 |
| HORVU0Hr1G019930.1 | Barley | golgi, mitochondrion, vacuole | 70.81 | 92.68 |
| TraesCS4A01G360500.1 | Wheat | golgi, mitochondrion, vacuole | 91.93 | 92.5 |
| TraesCS4A01G360600.1 | Wheat | mitochondrion | 91.3 | 91.88 |
| TraesCS4A01G069900.1 | Wheat | golgi, mitochondrion, vacuole | 90.68 | 90.68 |
| TraesCS4A01G360300.1 | Wheat | golgi, mitochondrion, vacuole | 59.01 | 88.78 |
| GSMUA_AchrUn_... | Banana | golgi | 64.6 | 84.55 |
| Solyc05g023920.1.1 | Tomato | plastid | 48.45 | 78.79 |
| ATMG01275.1 | Thale cress | endoplasmic reticulum | 57.76 | 72.09 |
| CDY45488 | Canola | golgi, mitochondrion, nucleus, plastid | 65.84 | 66.67 |
| CDY36712 | Canola | golgi, mitochondrion, nucleus, plastid | 65.84 | 66.67 |
| BAC19852 | Rice | plasma membrane | 67.7 | 33.54 |
| TraesCS3A01G430400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 26.09 | 22.46 |
| TraesCS3A01G430300.1 | Wheat | extracellular, golgi | 0.0 | 0.0 |
| TraesCS4A01G155400.1 | Wheat | extracellular, golgi | 0.0 | 0.0 |
| TraesCS1A01G130500.1 | Wheat | extracellular, golgi | 0.0 | 0.0 |
| TraesCS5A01G056300.1 | Wheat | extracellular, plasma membrane | 0.0 | 0.0 |
| TraesCS7A01G290700.1 | Wheat | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G456900.1 | EnsemblPlantsGene:TraesCS3A01G456900 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0055114 | InterPro:NADH_UbQ_OxRdtase_su1/FPO | InterPro:NADH_UbQ_OxRdtase_su1_CS | PANTHER:PTHR11432 | PANTHER:PTHR11432:SF3 | PFAM:PF00146 |
| ScanProsite:PS00667 | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:694374085..694374571
Molecular Weight (calculated)
17461.4 Da
IEP (calculated)
10.455
GRAVY (calculated)
0.319
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFVQRRKGP DVVGSFGLLQ PLADGLKLIL KEPISPSSAN FSLFRMAPVA TFMLSLVAWA VVPFDYGMVL SDPNIGLLYL FAIPSLGVYG IIIAGWSSKT
101: GGGHSVAYDI RTNWSKWVCA AGVERSTLHR CGPTGLGLIN PFFHSSRGRS LFRAGIEKWK S
101: GGGHSVAYDI RTNWSKWVCA AGVERSTLHR CGPTGLGLIN PFFHSSRGRS LFRAGIEKWK S
1: MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL SDPNIGLLYL FAISSLGVYG IIIAGRSSN
Arabidopsis Description
NADH dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q3EC42]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.