Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G204300.1 | Wheat | extracellular, golgi | 98.57 | 98.57 |
| TraesCS3A01G430300.1 | Wheat | extracellular, golgi | 98.57 | 98.57 |
| TraesCS3B01G582300.1 | Wheat | extracellular, golgi | 98.57 | 98.57 |
| TraesCS5A01G056300.1 | Wheat | extracellular, plasma membrane | 97.14 | 97.14 |
| TraesCS7A01G290700.1 | Wheat | endoplasmic reticulum, extracellular | 91.43 | 92.75 |
| TraesCS1A01G130500.1 | Wheat | extracellular, golgi | 57.14 | 57.14 |
| TraesCS4A01G069900.1 | Wheat | golgi, mitochondrion, vacuole | 0.0 | 0.0 |
| TraesCS4A01G360300.1 | Wheat | golgi, mitochondrion, vacuole | 0.0 | 0.0 |
| TraesCS4A01G360500.1 | Wheat | golgi, mitochondrion, vacuole | 0.0 | 0.0 |
| TraesCS4A01G360600.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS3A01G456900.1 | Wheat | golgi, mitochondrion, vacuole | 0.0 | 0.0 |
| TraesCS6A01G114500.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS6A01G397300.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 0.0 | 0.0 |
| TraesCS7A01G080700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 0.0 | 0.0 |
| TraesCS3A01G430400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 0.0 | 0.0 |
| TraesCS7A01G388200.1 | Wheat | golgi | 0.0 | 0.0 |
| TraesCS1A01G098600.1 | Wheat | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G155400.1 | EnsemblPlantsGene:TraesCS4A01G155400 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0055114 | InterPro:NADH_UbQ_OxRdtase_su1/FPO | PANTHER:PTHR11432 | PANTHER:PTHR11432:SF13 | PFAM:PF00146 | SEG:seg |
| TMHMM:TMhelix | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:310762291..310762503
Molecular Weight (calculated)
7989.3 Da
IEP (calculated)
11.090
GRAVY (calculated)
0.804
Length
70 amino acids
Sequence
(BLAST)
(BLAST)
1: MNKGVGILEM TMGIFITLTK AYLFLFISIT IRWTLPRMRM DQLLNLGWKF LLPISLGNLL LTTSSQLVSL
001: SSMGSALFFL GEYANMILMS GPCTLFFPGG WPPILDLPIF KKIPGSIWFS IKVLLFLFLY IWVRAAFPRY RYDQLMGLGR KVFLPLSLAR VVPVSGLLVT
101: FQWLP
101: FQWLP
Arabidopsis Description
NAD1CNADH dehydrogenase 1C [Source:TAIR;Acc:ATMG00516]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.