CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G064770.1	Barley	vacuole	96.41	96.41
HORVU1Hr1G048090.1	Barley	vacuole	96.41	96.41
GRMZM5G874448_P01	Maize	plastid	95.86	95.86
HORVU7Hr1G107860.1	Barley	plasma membrane	75.41	95.45
TraesCS2D01G557100.1	Wheat	plastid	48.62	94.12
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	47.79	92.51
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	40.88	91.93
TraesCS7B01G080400.1	Wheat	vacuole	45.58	88.24
HORVU4Hr1G027700.1	Barley	vacuole	32.32	84.78
ATCG01100.1	Thale cress	plasma membrane	78.45	78.89
CDY21196	Canola	plasma membrane	68.78	78.8
CDY19661	Canola	plasma membrane	68.78	78.8
CDY14838	Canola	plasma membrane	68.78	78.8
CDX95227	Canola	plasma membrane	68.78	78.8
PGSC0003DMT400022653	Potato	vacuole	29.01	76.64
Solyc02g011800.1.1	Tomato	plasma membrane	25.97	68.61
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	29.28	61.99
KRG99456	Soybean	peroxisome, plasma membrane	25.41	47.92
BAC19852	Rice	plasma membrane	31.22	34.77

Protein Annotations

MapMan:1.1.8.1.1.1	EntrezGene:3131395	ProteinID:ADD62877.1	ProteinID:AJC99371.1	ProteinID:AJC99458.1	EnsemblPlants:CAA33910
EnsemblPlantsGene:CAA33910	ProteinID:CAA33910	ProteinID:CAA33910.1	UniProt:E9KIT4	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005747	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016655	GO:GO:0019684	GO:GO:0045333	GO:GO:0048038
GO:GO:0055114	HAMAP:MF_01350	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	RefSeq:NP_039449.1	PFAM:PF00146
ScanProsite:PS00667	ScanProsite:PS00668	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	Reactome:R-HSA-611105	Reactome:R-HSA-6799198
TMHMM:TMhelix	UniParc:UPI00001305D5	SEG:seg	:	:	:

Description

ndhANADH dehydrogenase ND1

Coordinates

chrPt:-:110631..112706

Molecular Weight (calculated)

40358.2 Da

IEP (calculated)

4.576

GRAVY (calculated)

0.776

Length

362 amino acids

Sequence
(BLAST)

001: MIIDRVQVEA INSFSNLELL KEVYGLIWIL PILTLLLGIT IEVLVIVWLE REISASIQQR IGPEYAGPLG LLQAIADGTK LLFKEDILPS RGDIPLFSIG
101: PSIAVISILL SFLVIPLGYR FVLADLSIGV FLWIAISSIA PIGLLMAGYS SNNKYSFSGG LRAAAQSISY EIPLTFCVLA ISLLSNSSST VDIVEAQSKY
201: GFFGWNLWRQ PIGFLVFLIS SLAECERLPF DLPEAEEELV AGYQTEYSGI KYGLFYLVSY LNLLVSSLFV TVLYLGGWNL SIPYISFFGF FQMNKMVGIL
301: EMTMSIFITL TKAYLFLFIS ITIRWTLPRM RMDQLLNLGW KFLLPISLGN LLLTTSSQLV SL

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.