CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	60.82	55.62
TraesCS2D01G557100.1	Wheat	plastid	60.82	55.62
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	51.46	54.66
TraesCS7B01G080400.1	Wheat	vacuole	56.73	51.87
PGSC0003DMT400022653	Potato	vacuole	39.18	48.91
Solyc02g011800.1.1	Tomato	plasma membrane	38.01	47.45
KRG99456	Soybean	peroxisome, plasma membrane	51.46	45.83
HORVU4Hr1G027700.1	Barley	vacuole	35.67	44.2
ATCG01100.1	Thale cress	plasma membrane	62.57	29.72
HORVU5Hr1G064770.1	Barley	vacuole	61.99	29.28
HORVU1Hr1G048090.1	Barley	vacuole	61.99	29.28
CAA33910	Rice	vacuole	61.99	29.28
CDY21196	Canola	plasma membrane	53.22	28.8
CDY19661	Canola	plasma membrane	53.22	28.8
CDY14838	Canola	plasma membrane	53.22	28.8
CDX95227	Canola	plasma membrane	53.22	28.8
GRMZM5G874448_P01	Maize	plastid	60.82	28.73
HORVU7Hr1G107860.1	Barley	plasma membrane	38.6	23.08

Protein Annotations

MapMan:35.1	UniProt:A0A0R0F8M9	EMBL:ACUP02011211	EnsemblPlantsGene:GLYMA_18G155600	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005747	GO:GO:0005886	GO:GO:0006091	GO:GO:0008137	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016651	GO:GO:0045333
GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	EnsemblPlants:KRG99585	ProteinID:KRG99585	ProteinID:KRG99585.1
InterPro:NADH_UbQ_OxRdtase_su1/FPO	PFAM:PF00146	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	TMHMM:TMhelix	UniParc:UPI0006EDC92F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:33816219..33817151

Molecular Weight (calculated)

18975.6 Da

IEP (calculated)

8.682

GRAVY (calculated)

0.619

Length

171 amino acids

Sequence
(BLAST)

001: IYGIIWVFAL ILILILGITI SVLAIVWLER EISAGIQQRI GPEYTGPFGV LQALLDETKL LFKENLIPSR GDICLFIIPF GYNFVLSDLN IGVFLWIAIS
101: SIAPIGLLML GYGSNNKYSF LGGLREAAQS ISYEIPLTLS HRFSPSAERE KHALSRNSLM CAKRFRIALS A

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.