Factsheet for Solyc02g011800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022653	Potato	vacuole	72.99	72.99
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	68.61	58.39
HORVU4Hr1G027700.1	Barley	vacuole	51.82	51.45
TraesCS2D01G557100.1	Wheat	plastid	69.34	50.8
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	67.88	49.73
TraesCS7B01G080400.1	Wheat	vacuole	64.23	47.06
KRG99456	Soybean	peroxisome, plasma membrane	56.2	40.1
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	47.45	38.01
ATCG01100.1	Thale cress	plasma membrane	72.99	27.78
HORVU1Hr1G048090.1	Barley	vacuole	69.34	26.24
HORVU5Hr1G064770.1	Barley	vacuole	69.34	26.24
GRMZM5G874448_P01	Maize	plastid	68.61	25.97
CAA33910	Rice	vacuole	68.61	25.97
CDY21196	Canola	plasma membrane	46.72	20.25
CDY19661	Canola	plasma membrane	46.72	20.25
CDY14838	Canola	plasma membrane	46.72	20.25
CDX95227	Canola	plasma membrane	46.72	20.25
Solyc05g023920.1.1	Tomato	plastid	13.87	19.19
HORVU7Hr1G107860.1	Barley	plasma membrane	34.31	16.43
Solyc02g011790.1.1	Tomato	extracellular, plasma membrane, vacuole	6.57	6.98
Solyc11g021230.1.1	Tomato	plastid	1.46	1.07
Solyc11g050760.1.1	Tomato	peroxisome, plastid, vacuole	0.73	0.88
Solyc02g080280.1.1	Tomato	mitochondrion, plasma membrane, plastid	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0005886	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016655
GO:GO:0019684	GO:GO:0045333	GO:GO:0048038	GO:GO:0055114	UniProt:K4B4H9	InterPro:NADH_UbQ_OxRdtase_su1/FPO
PFAM:PF00146	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	EnsemblPlantsGene:Solyc02g011800.1	EnsemblPlants:Solyc02g011800.1.1	TMHMM:TMhelix
UniParc:UPI000276806F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:13783640..13784112

Molecular Weight (calculated)

15253.0 Da

IEP (calculated)

4.127

GRAVY (calculated)

0.969

Length

137 amino acids

Sequence
(BLAST)

001: MIIDTTEIET LNSFSKFESL KEVYGIVWML FPIVTLVLGI TIGLLVIVWL EREISAGIQQ CIGPKYNLIP SISDTRLFSI GTSIVVISIF LSYSVIPFCD
101: YLVLADLSIV VFWIDISSIA PVVLLMSGYG SNNKYSF

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.