Factsheet for TraesCS2D01G228400.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G027700.1	Barley	vacuole	74.53	86.96
TraesCS2D01G557100.1	Wheat	plastid	96.27	82.89
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	94.41	81.28
TraesCS7B01G080400.1	Wheat	vacuole	91.3	78.61
PGSC0003DMT400022653	Potato	vacuole	63.98	75.18
Solyc02g011800.1.1	Tomato	plasma membrane	58.39	68.61
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	54.66	51.46
KRG99456	Soybean	peroxisome, plasma membrane	55.28	46.35
HORVU5Hr1G064770.1	Barley	vacuole	95.65	42.54
CAA33910	Rice	vacuole	91.93	40.88
GRMZM5G874448_P01	Maize	plastid	90.06	40.06
ATCG01100.1	Thale cress	plasma membrane	73.29	32.78
TraesCS3D01G173600.1	Wheat	golgi, mitochondrion, vacuole	24.84	27.78
HORVU7Hr1G107860.1	Barley	plasma membrane	48.45	27.27
CDY21196	Canola	plasma membrane	52.8	26.9
CDY19661	Canola	plasma membrane	52.8	26.9
CDY14838	Canola	plasma membrane	52.8	26.9
CDX95227	Canola	plasma membrane	52.8	26.9
TraesCS1D01G258700.1	Wheat	mitochondrion	24.22	24.22
TraesCS2D01G247600.1	Wheat	golgi, mitochondrion, vacuole	24.22	24.22
TraesCS4D01G138500.1	Wheat	mitochondrion	24.22	24.22
TraesCS5D01G214900.1	Wheat	mitochondrion	23.6	23.6
TraesCS2D01G243600.1	Wheat	extracellular, golgi	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS2D01G228400.1	EnsemblPlantsGene:TraesCS2D01G228400	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_su1/FPO	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	PFAM:PF00146	SEG:seg
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:196965273..196965758

Molecular Weight (calculated)

17505.9 Da

IEP (calculated)

4.449

GRAVY (calculated)

0.929

Length

161 amino acids

Sequence
(BLAST)

001: MIIDRVEVET INSFSKLELL KEVYGLISVL PILTLLLGIT IEVLIIVWLE REISASIQQC IGPEYAGPLG LLQAIADGTR LLFKEDILPS RGDISLFSIG
101: PSIAVISVLL RFLVIPLGYH FVLADLSIGV FLWIAISSIA PIGLLMAGYS SNNKYSFSSG L

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.