Factsheet for GRMZM5G874448_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

plastid: 18453340
plastid: 20089766
plastid: 22065420
plastid: 23198870
plasma membrane: 27341663

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33910	Rice	vacuole	95.86	95.86
HORVU1Hr1G048090.1	Barley	vacuole	95.86	95.86
HORVU5Hr1G064770.1	Barley	vacuole	95.3	95.3
HORVU7Hr1G107860.1	Barley	plasma membrane	74.86	94.76
TraesCS2D01G557100.1	Wheat	plastid	47.79	92.51
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	47.24	91.44
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	40.06	90.06
TraesCS7B01G080400.1	Wheat	vacuole	44.75	86.63
HORVU4Hr1G027700.1	Barley	vacuole	31.77	83.33
ATCG01100.1	Thale cress	plasma membrane	78.73	79.17
CDY19661	Canola	plasma membrane	69.06	79.11
CDY21196	Canola	plasma membrane	69.06	79.11
CDY14838	Canola	plasma membrane	69.06	79.11
CDX95227	Canola	plasma membrane	69.06	79.11
PGSC0003DMT400022653	Potato	vacuole	29.01	76.64
Solyc02g011800.1.1	Tomato	plasma membrane	25.97	68.61
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	28.73	60.82
KRG99456	Soybean	peroxisome, plasma membrane	25.41	47.92
Zm00001d046083_P001	Maize	mitochondrion	13.81	31.06

Protein Annotations

MapMan:1.1.8.1.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0048038
GO:GO:0055114	EnsemblPlantsGene:GRMZM5G874448	EnsemblPlants:GRMZM5G874448_P01	EnsemblPlants:GRMZM5G874448_T01	HAMAP:MF_01350	InterPro:NADH_UbQ_OxRdtase_su1/FPO
InterPro:NADH_UbQ_OxRdtase_su1_CS	PFAM:PF00146	ScanProsite:PS00667	ScanProsite:PS00668	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13
TMHMM:TMhelix	UniParc:UPI00001305D2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrPt:-:114343..116454

Molecular Weight (calculated)

40375.2 Da

IEP (calculated)

4.599

GRAVY (calculated)

0.787

Length

362 amino acids

Sequence
(BLAST)

001: MIIDRVEVET INSFSKSELF KEIYGLIWIL PIFALLLGIT IEVLVIVWLE REISASIQQR IGPEYAGPLG LLQAIADGTK LLLKEDILPS RGDIPLFSIG
101: PSIAVISILL SFLVIPLGYR FVLADLSIGV FLWIAISSIA PIGLLMAGYS SNNKYSFSGG LRAAAQSISY EIPLTFCVLA ISLLSNSSST VDIVEAQSKY
201: GFFGWNLWRQ PIGFLVFLIS SLAECERLPF DLPEAEEELV AGYQTEYSGI KYGLFYLVSY LNLLVSSLFV TVLYLGGWNF SIPYISFFGF FQMNKIIGIL
301: EMVIGIFITL TKAYLFLFIS ITIRWTLPRM RMDQLLNLGW KFLLPISLGN LLLTTSSQLV SL

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.