CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95227	Canola	plasma membrane	100.0	100.0
CDY14838	Canola	plasma membrane	100.0	100.0
CDY19661	Canola	plasma membrane	100.0	100.0
ATCG01100.1	Thale cress	plasma membrane	95.25	83.61
CDY03034	Canola	plasma membrane	55.06	80.93
HORVU7Hr1G107860.1	Barley	plasma membrane	69.94	77.27
GRMZM5G874448_P01	Maize	plastid	79.11	69.06
CAA33910	Rice	vacuole	78.8	68.78
HORVU1Hr1G048090.1	Barley	vacuole	78.48	68.51
HORVU5Hr1G064770.1	Barley	vacuole	78.16	68.23
TraesCS2D01G557100.1	Wheat	plastid	34.18	57.75
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	33.86	57.22
TraesCS7B01G080400.1	Wheat	vacuole	31.65	53.48
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	28.8	53.22
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	26.9	52.8
PGSC0003DMT400022653	Potato	vacuole	22.78	52.55
Solyc02g011800.1.1	Tomato	plasma membrane	20.25	46.72
HORVU4Hr1G027700.1	Barley	vacuole	18.67	42.75
KRG99456	Soybean	peroxisome, plasma membrane	23.1	38.02
CDY45488	Canola	golgi, mitochondrion, nucleus, plastid	14.24	28.3
CDY36712	Canola	golgi, mitochondrion, nucleus, plastid	14.24	28.3

Protein Annotations

MapMan:1.1.8.1.1.1	GO:A0A078FR89	UniProt:A0A078FR89	ProteinID:CDY14838.1	ProteinID:CDY19661.1	EnsemblPlants:CDY21196
ProteinID:CDY21196	ProteinID:CDY21196.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00015403001	HAMAP:MF_01350	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	PFAM:PF00146
ScanProsite:PS00667	ScanProsite:PS00668	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	TMHMM:TMhelix	UniParc:UPI0004EDB8D5
SEG:seg	:	:	:	:	:

Description

BnaA01g34270DBnaA01g34270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR89]

Coordinates

chrLK032116:+:497482..499595

Molecular Weight (calculated)

35093.1 Da

IEP (calculated)

4.842

GRAVY (calculated)

0.591

Length

316 amino acids

Sequence
(BLAST)

001: MDSYGYLEIS AGIQQRIGPE YAGPLGILQA LADGTKLLFK EDLRPSRGNT PLFSIGPSIA VISILLSYSV IPFSNHLVLA DLNIGIFLWI AISSVAPIGL
101: LMSGYGSNNK YSFLGGLRAA AQAISYEIPL TLCVLSISLR LSNSLSTVDI VEAQSKYGFW GWNLWRQPIG FIIFLISSLA ECERLPFDLP EAEEELIAGY
201: QTEYSGIKFG LFYVASYLNL LISSLFVTVL YLGGWNISIP YISMLELFEK DQIFGTTIGI FITLAKTYLF LFISIATRWT LPRLRMDQLL NLGWKFLLPI
301: SLGNLLLTTS FQLFSL

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.