CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane
Any Predictor:	peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g011800.1.1	Tomato	plasma membrane	40.1	56.2
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	46.35	55.28
PGSC0003DMT400022653	Potato	vacuole	38.02	53.28
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	45.83	51.46
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	48.44	49.73
TraesCS2D01G557100.1	Wheat	plastid	47.92	49.2
HORVU4Hr1G027700.1	Barley	vacuole	34.38	47.83
TraesCS7B01G080400.1	Wheat	vacuole	45.83	47.06
ATCG01100.1	Thale cress	plasma membrane	48.96	26.11
HORVU5Hr1G064770.1	Barley	vacuole	47.92	25.41
GRMZM5G874448_P01	Maize	plastid	47.92	25.41
CAA33910	Rice	vacuole	47.92	25.41
HORVU1Hr1G048090.1	Barley	vacuole	47.4	25.14
CDY21196	Canola	plasma membrane	38.02	23.1
CDY19661	Canola	plasma membrane	38.02	23.1
CDY14838	Canola	plasma membrane	38.02	23.1
CDX95227	Canola	plasma membrane	38.02	23.1
HORVU7Hr1G107860.1	Barley	plasma membrane	28.65	19.23

Protein Annotations

MapMan:35.1	UniProt:A0A0R0F038	EMBL:ACUP02011067	EnsemblPlantsGene:GLYMA_18G146300	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747
GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0045333
GO:GO:0055114	EnsemblPlants:KRG99456	ProteinID:KRG99456	ProteinID:KRG99456.1	InterPro:NADH_UbQ_OxRdtase_su1/FPO	PFAM:PF00146
PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	TMHMM:TMhelix	UniParc:UPI0006EDF6D8	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:24769667..24772625

Molecular Weight (calculated)

21580.0 Da

IEP (calculated)

8.407

GRAVY (calculated)

0.493

Length

192 amino acids

Sequence
(BLAST)

001: KKESEWNEFE YQFISKKPSL TLELPKQELY KWKIHLPGFI NLQILPRLVK RMKLADIMTI LGDIWNYMVI SPILILILEI TTSVLAIVWL EREISAGIQQ
101: RIGHECAGPF GVLQTKENLI PSKGDILFSI GPSISVISII ISYSVIPLGY NFVLSDLNIG VFLWIVVLSI APIGLLMSGY GSNNKYSFLG GL

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.