Factsheet for TraesCSU01G261700.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	81.28	94.41
TraesCS7B01G080400.1	Wheat	vacuole	91.44	91.44
HORVU4Hr1G027700.1	Barley	vacuole	64.17	86.96
PGSC0003DMT400022653	Potato	vacuole	55.62	75.91
Solyc02g011800.1.1	Tomato	plasma membrane	49.73	67.88
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	55.62	60.82
HORVU5Hr1G064770.1	Barley	vacuole	95.72	49.45
KRG99456	Soybean	peroxisome, plasma membrane	49.73	48.44
CAA33910	Rice	vacuole	92.51	47.79
GRMZM5G874448_P01	Maize	plastid	91.44	47.24
ATCG01100.1	Thale cress	plasma membrane	76.47	39.72
HORVU7Hr1G107860.1	Barley	plasma membrane	54.55	35.66
CDY21196	Canola	plasma membrane	57.22	33.86
CDY19661	Canola	plasma membrane	57.22	33.86
CDY14838	Canola	plasma membrane	57.22	33.86
CDX95227	Canola	plasma membrane	57.22	33.86
TraesCSU01G173300.1	Wheat	golgi, mitochondrion, vacuole	23.53	30.56
TraesCSU01G180100.1	Wheat	golgi, mitochondrion, vacuole	23.53	30.56
TraesCSU01G204300.1	Wheat	extracellular, golgi	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCSU01G261700.1	EnsemblPlantsGene:TraesCSU01G261700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0055114
InterPro:NADH_UbQ_OxRdtase_su1/FPO	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	PFAM:PF00146	SEG:seg	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:416132375..416132938

Molecular Weight (calculated)

20411.6 Da

IEP (calculated)

4.867

GRAVY (calculated)

0.949

Length

187 amino acids

Sequence
(BLAST)

001: MIIDRVEVET INSFWKLELL KEVYGLISIL PILILLLGIT IEVLVIVWLE REISASIQQR IGPEYAGPLG LLQAIAEGTK LLFKEDILPS RGDISLFSIG
101: PSIAVISVLL SFLVIPLGYH FVLADLSIGV FLWIAISSIA PIGLLMAGYS SNNKYSFSGG LRAAAQSISY EIPLTFCVLA ISLRVIH

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.