Factsheet for ATCG01100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95227	Canola	plasma membrane	83.61	95.25
CDY14838	Canola	plasma membrane	83.61	95.25
CDY19661	Canola	plasma membrane	83.61	95.25
CDY21196	Canola	plasma membrane	83.61	95.25
PGSC0003DMT400022653	Potato	vacuole	30.83	81.02
GRMZM5G874448_P01	Maize	plastid	79.17	78.73
CAA33910	Rice	vacuole	78.89	78.45
HORVU1Hr1G048090.1	Barley	vacuole	78.61	78.18
HORVU5Hr1G064770.1	Barley	vacuole	78.61	78.18
HORVU7Hr1G107860.1	Barley	plasma membrane	61.67	77.62
TraesCS2D01G557100.1	Wheat	plastid	40.0	77.01
TraesCSU01G261700.1	Wheat	endoplasmic reticulum, golgi, vacuole	39.72	76.47
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	32.78	73.29
TraesCS7B01G080400.1	Wheat	vacuole	38.06	73.26
Solyc02g011800.1.1	Tomato	plasma membrane	27.78	72.99
HORVU4Hr1G027700.1	Barley	vacuole	25.0	65.22
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	29.72	62.57
KRG99456	Soybean	peroxisome, plasma membrane	26.11	48.96
AT2G07785.1	Thale cress	golgi, mitochondrion, plastid, vacuole	11.39	41.41
ATMG01275.1	Thale cress	endoplasmic reticulum	13.33	37.21

Protein Annotations

MapMan:1.1.8.1.1.1	EntrezGene:844804	ArrayExpress:ATCG01100	EnsemblPlantsGene:ATCG01100	RefSeq:ATCG01100	TAIR:ATCG01100
RefSeq:ATCG01100-TAIR-G	EnsemblPlants:ATCG01100.1	TAIR:ATCG01100.1	ProteinID:BAA84442.1	ProteinID:CAA66944.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0005747	GO:GO:0005886	GO:GO:0006091	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016651
GO:GO:0016655	GO:GO:0019684	GO:GO:0045333	GO:GO:0048038	GO:GO:0055114	GO:GO:0070469
HAMAP:MF_01350	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	Symbol:NDHA	RefSeq:NP_051114.1	PFAM:PF00146
ScanProsite:PS00667	ScanProsite:PS00668	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	UniProt:Q37165	TMHMM:TMhelix
UniParc:UPI00001638AF	SEG:seg	:	:	:	:

Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]

Coordinates

chrPt:-:119847..122009

Molecular Weight (calculated)

40023.6 Da

IEP (calculated)

5.353

GRAVY (calculated)

0.737

Length

360 amino acids

Sequence
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.