Factsheet for TraesCS2D01G557100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G228400.1	Wheat	endoplasmic reticulum, golgi, vacuole	82.89	96.27
PGSC0003DMT400022653	Potato	vacuole	57.22	78.1
Solyc02g011800.1.1	Tomato	plasma membrane	50.8	69.34
KRG99585	Soybean	endoplasmic reticulum, plasma membrane	55.62	60.82
HORVU1Hr1G048090.1	Barley	vacuole	97.33	50.28
CAA33910	Rice	vacuole	94.12	48.62
KRG99456	Soybean	peroxisome, plasma membrane	49.2	47.92
GRMZM5G874448_P01	Maize	plastid	92.51	47.79
ATCG01100.1	Thale cress	plasma membrane	77.01	40.0
CDY21196	Canola	plasma membrane	57.75	34.18
CDY19661	Canola	plasma membrane	57.75	34.18
CDY14838	Canola	plasma membrane	57.75	34.18
CDX95227	Canola	plasma membrane	57.75	34.18
TraesCS3D01G173600.1	Wheat	golgi, mitochondrion, vacuole	24.06	31.25
TraesCS2D01G247600.1	Wheat	golgi, mitochondrion, vacuole	23.53	27.33
TraesCS4D01G138500.1	Wheat	mitochondrion	23.53	27.33
TraesCS1D01G258700.1	Wheat	mitochondrion	22.99	26.71
TraesCS5D01G214900.1	Wheat	mitochondrion	22.99	26.71
TraesCS2D01G243600.1	Wheat	extracellular, golgi	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS2D01G557100.1	EnsemblPlantsGene:TraesCS2D01G557100	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	PFAM:PF00146
ScanProsite:PS00667	SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2D:+:630267208..630267771

Molecular Weight (calculated)

20305.4 Da

IEP (calculated)

4.861

GRAVY (calculated)

0.914

Length

187 amino acids

Sequence
(BLAST)

001: MIIDRVEVET INSFSKLELL KEVYGLISIL PILTLLLGIT IEVLVIVWLE REISASIQQR IGPEYAGPLG LLQAIADGTK LLFKEDILPS RGDISLFSIG
101: PSIAVISVLL SFLVIPLGYH FVLADLSIGV FLWIAISSIA PIGLLMAGYS SNNKYSFSGG LRAAAQSISY EIPLTFCVLA ISLRVIR

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.