CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 3
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	golgi, mitochondrion, plastid, vacuole	20.0	89.58
VIT_08s0056g01050.t01	Wine grape	extracellular, golgi	23.26	81.97
Solyc11g021230.1.1	Tomato	plastid	63.72	73.26
TraesCS1A01G130500.1	Wheat	extracellular, golgi	19.07	58.57
CDX95227	Canola	plasma membrane	80.93	55.06
CDY14838	Canola	plasma membrane	80.93	55.06
CDY19661	Canola	plasma membrane	80.93	55.06
CDY21196	Canola	plasma membrane	80.93	55.06
TraesCS2D01G243600.1	Wheat	extracellular, golgi	17.67	54.29
TraesCS3B01G189200.1	Wheat	extracellular, golgi	17.21	52.86
TraesCS7A01G290700.1	Wheat	endoplasmic reticulum, extracellular	16.74	52.17
AGP50810	Barley	plasma membrane	20.93	27.61
CDY36712	Canola	golgi, mitochondrion, nucleus, plastid	5.12	6.92
CDY45488	Canola	golgi, mitochondrion, nucleus, plastid	5.12	6.92
VIT_08s0056g01060.t01	Wine grape	vacuole	2.79	5.83
HORVU5Hr1G005420.1	Barley	cytosol	0.47	1.41

Protein Annotations

EnsemblPlants:CDY03034	EnsemblPlantsGene:GSBRNA2T00115363001	GO:A0A078EQU6	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13
PFAM:PF00146	ProteinID:CDY03034	ProteinID:CDY03034.1	ScanProsite:PS00668	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EF1DB5	MapMan:35.1	:	:	:	:

Description

BnaC07g21930D

Coordinates

chrLK031939:+:522849..524749

Molecular Weight (calculated)

24326.9 Da

IEP (calculated)

4.878

GRAVY (calculated)

0.558

Length

215 amino acids

Sequence
(BLAST)

001: MSGYGSNNKY SFLGGLRAAA QAISYEIPLT LCVLSISLRL SNSLSTVDIV EAQSKYGFWG WNLWRQPIGF IIFLISSLAE CERLPFDLPE AEEELIAGYQ
101: TEYSGIKFGL FYVASYLNLL ISSLFVTVLY LGGWNISIPY ISMLELFEKD QIFGTTIGIF ITLAKTYLFL FISIATRWTL PRLRMDQLLN LGWKFLLPIS
201: LGNLLLTTSF QLFSL

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.