CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
plasma membrane 5
extracellular 3
endoplasmic reticulum 4
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0056g01050.t01	Wine grape	extracellular, golgi	23.31	62.3
TraesCS2D01G243600.1	Wheat	extracellular, golgi	25.15	58.57
TraesCS3B01G189200.1	Wheat	extracellular, golgi	24.54	57.14
TraesCS7A01G290700.1	Wheat	endoplasmic reticulum, extracellular	23.93	56.52
HORVU6Hr1G087850.1	Barley	extracellular, plasma membrane	20.25	50.0
Solyc11g021230.1.1	Tomato	plastid	26.99	23.53
CDY03034	Canola	plasma membrane	27.61	20.93
HORVU7Hr1G107860.1	Barley	plasma membrane	34.36	19.58
HORVU1Hr1G048090.1	Barley	vacuole	34.36	15.47
HORVU5Hr1G064770.1	Barley	vacuole	34.36	15.47
Solyc02g011790.1.1	Tomato	extracellular, plasma membrane, vacuole	1.84	2.33
Solyc11g050760.1.1	Tomato	peroxisome, plastid, vacuole	0.61	0.88
HORVU6Hr1G039110.1	Barley	extracellular, golgi, vacuole	0.0	0.0
VIT_08s0056g01060.t01	Wine grape	vacuole	0.0	0.0
HORVU5Hr1G005420.1	Barley	cytosol	0.0	0.0
HORVU4Hr1G052660.1	Barley	golgi, mitochondrion, vacuole	0.0	0.0
HORVU4Hr1G027700.1	Barley	vacuole	0.0	0.0
HORVU3Hr1G075010.1	Barley	cytosol, golgi, plasma membrane	0.0	0.0
HORVU3Hr1G044940.1	Barley	endoplasmic reticulum, extracellular, vacuole	0.0	0.0
HORVU2Hr1G004300.1	Barley	golgi, mitochondrion, plastid, vacuole	0.0	0.0
HORVU0Hr1G019930.1	Barley	golgi, mitochondrion, vacuole	0.0	0.0

Protein Annotations

MapMan:35.1	EnsemblPlants:AGP50810	EnsemblPlantsGene:AGP50810	ProteinID:AGP50810	ProteinID:AGP50810.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	ENA:KC912687.1:CDS:complement(111780..112271)	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	PFAM:PF00146
ScanProsite:PS00668	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13	GO:S4Z210	UniProt:S4Z210	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI0003585BF0	SEG:seg	:	:	:

Description

ndhANADH-plastoquinone oxidoreductase subunit 1

Coordinates

chrPt:-:111780..112271

Molecular Weight (calculated)

18863.5 Da

IEP (calculated)

4.723

GRAVY (calculated)

0.720

Length

163 amino acids

Sequence
(BLAST)

001: MVFFGWNIWR QPIGFLVFLI SSLAECERLP FDLPEAEEEL VAGYQTEYSG IKYGLFYLVS YLNLLVSSLF VTVLYLGGWN FSIPYISFFD FFQMNKAVGI
101: LEMTMGIFIT LTKAYLFLFI SITIRWTLPR MRMDQLLNLG WKFLLPISLG NLLLTTSSQL VSL

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.