Factsheet for VIT_08s0056g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0396g00020.t01	Wine grape	plastid	30.1	31.31
HORVU5Hr1G005420.1	Barley	cytosol	14.56	21.13
Solyc02g011790.1.1	Tomato	extracellular, plasma membrane, vacuole	8.74	6.98
CDY03034	Canola	plasma membrane	5.83	2.79
AGP50810	Barley	plasma membrane	0.0	0.0
GSMUA_AchrUn_...	Banana	golgi, mitochondrion, plastid, vacuole	0.0	0.0
Solyc11g050760.1.1	Tomato	peroxisome, plastid, vacuole	0.0	0.0
TraesCS1A01G130500.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS2D01G243600.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G189200.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS7A01G290700.1	Wheat	endoplasmic reticulum, extracellular	0.0	0.0
VIT_08s0056g01050.t01	Wine grape	extracellular, golgi	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB55989	ProteinID:CCB55989.1	UniProt:F6HMW4	EMBL:FN595995	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005747	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0045333	GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_su1/FPO	PFAM:PF00146	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13
TMHMM:TMhelix	UniParc:UPI0002108530	ArrayExpress:VIT_08s0056g01060	EnsemblPlantsGene:VIT_08s0056g01060	EnsemblPlants:VIT_08s0056g01060.t01	unigene:Vvi.24444
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:1542129..1542878

Molecular Weight (calculated)

11372.3 Da

IEP (calculated)

4.538

GRAVY (calculated)

0.882

Length

103 amino acids

Sequence
(BLAST)

001: MDVCTYLLGI TIGVLIIVWL EREISAVIQQ RIGPEYVGPL GILQDLANGT KLLFKENLLP SREDTRLFSI GPSIAIISIL LSYLIIPFGF NLVLSNLNIG
101: VFL

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.