Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, plastid, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- mitochondrion 3
- golgi 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0056g01050.t01 | Wine grape | extracellular, golgi | 85.42 | 67.21 |
| TraesCS1A01G130500.1 | Wheat | extracellular, golgi | 85.42 | 58.57 |
| TraesCS2D01G243600.1 | Wheat | extracellular, golgi | 68.75 | 47.14 |
| TraesCS3B01G189200.1 | Wheat | extracellular, golgi | 66.67 | 45.71 |
| TraesCS7A01G290700.1 | Wheat | endoplasmic reticulum, extracellular | 64.58 | 44.93 |
| Solyc02g080280.1.1 | Tomato | mitochondrion, plasma membrane, plastid | 87.5 | 22.34 |
| CDY03034 | Canola | plasma membrane | 89.58 | 20.0 |
| GSMUA_AchrUn_... | Banana | golgi | 0.0 | 0.0 |
| HORVU3Hr1G075010.1 | Barley | cytosol, golgi, plasma membrane | 0.0 | 0.0 |
| VIT_08s0056g01060.t01 | Wine grape | vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP29050_001 | EnsemblPlants:GSMUA_AchrUn_randomT29050_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG29050_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:NADH_UbQ_OxRdtase_su1/FPO | PANTHER:PTHR11432 | PANTHER:PTHR11432:SF13 | PFAM:PF00146 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002959885 | UniProt:M0UDB2 | MapMan:35.2 | : |
Description
NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG29050_001]
Coordinates
chrchrUn_random:-:140309078..140309224
Molecular Weight (calculated)
5581.1 Da
IEP (calculated)
12.223
GRAVY (calculated)
0.688
Length
48 amino acids
Sequence
(BLAST)
(BLAST)
1: MFLFISITTR WTLPRMRMDQ LLNLGWKFLL PISLGNLLLT TSSQLVSL
001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL
Arabidopsis Description
NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.