Factsheet for VIT_08s0056g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 1
plastid 3
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	golgi, mitochondrion, plastid, vacuole	67.21	85.42
TraesCS1A01G130500.1	Wheat	extracellular, golgi	62.3	54.29
TraesCS2D01G243600.1	Wheat	extracellular, golgi	52.46	45.71
TraesCS3B01G189200.1	Wheat	extracellular, golgi	50.82	44.29
TraesCS7A01G290700.1	Wheat	endoplasmic reticulum, extracellular	49.18	43.48
AGP50810	Barley	plasma membrane	62.3	23.31
CDY03034	Canola	plasma membrane	81.97	23.26
Solyc02g011790.1.1	Tomato	extracellular, plasma membrane, vacuole	9.84	4.65
HORVU5Hr1G005420.1	Barley	cytosol	1.64	1.41
Solyc11g050760.1.1	Tomato	peroxisome, plastid, vacuole	1.64	0.88
VIT_00s0396g00020.t01	Wine grape	plastid	0.0	0.0
VIT_08s0056g01060.t01	Wine grape	vacuole	0.0	0.0

Protein Annotations

MapMan:35.2	ProteinID:CCB55988	ProteinID:CCB55988.1	UniProt:F6HMW3	EMBL:FN595995	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005747	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016655	GO:GO:0019684	GO:GO:0045333
GO:GO:0048038	GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_su1/FPO	PFAM:PF00146	PANTHER:PTHR11432	PANTHER:PTHR11432:SF13
TIGR:TC56161	TMHMM:TMhelix	UniParc:UPI00015CB73F	ArrayExpress:VIT_08s0056g01050	EnsemblPlantsGene:VIT_08s0056g01050	EnsemblPlants:VIT_08s0056g01050.t01
unigene:Vvi.7941	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:1539562..1542128

Molecular Weight (calculated)

7017.0 Da

IEP (calculated)

10.871

GRAVY (calculated)

0.866

Length

61 amino acids

Sequence
(BLAST)

1: MAIGIFITLA KTYLLLFIPI TTRWTLPRLR MDQLLNIGWK FLLPISLDNL LLTTSSQLLS L

Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)

001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL

Arabidopsis Description

NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.