Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, vacuole

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g080280.1.1 Tomato mitochondrion, plasma membrane, plastid 57.89 35.11
Solyc11g021230.1.1 Tomato plastid 54.39 33.16
VIT_08s0056g01050.t01 Wine grape extracellular, golgi 0.88 1.64
TraesCS7A01G290700.1 Wheat endoplasmic reticulum, extracellular 0.88 1.45
TraesCS1A01G130500.1 Wheat extracellular, golgi 0.88 1.43
TraesCS2D01G243600.1 Wheat extracellular, golgi 0.88 1.43
TraesCS3B01G189200.1 Wheat extracellular, golgi 0.88 1.43
HORVU5Hr1G005420.1 Barley cytosol 0.88 1.41
Solyc02g011800.1.1 Tomato plasma membrane 0.88 0.73
AGP50810 Barley plasma membrane 0.88 0.61
Solyc02g011790.1.1 Tomato extracellular, plasma membrane, vacuole 0.0 0.0
Solyc05g023920.1.1 Tomato plastid 0.0 0.0
VIT_08s0056g01060.t01 Wine grape vacuole 0.0 0.0
Protein Annotations
MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005747GO:GO:0005886GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0016491GO:GO:0045333GO:GO:0055114UniProt:K4D8N9InterPro:NADH_UbQ_OxRdtase_su1/FPO
PFAM:PF00146PANTHER:PTHR11432PANTHER:PTHR11432:SF13EnsemblPlantsGene:Solyc11g050760.1EnsemblPlants:Solyc11g050760.1.1TMHMM:TMhelix
UniParc:UPI000276A906:::::
Description
No Description!
Coordinates
chr11:+:16103595..16104013
Molecular Weight (calculated)
13026.9 Da
IEP (calculated)
4.319
GRAVY (calculated)
0.510
Length
114 amino acids
Sequence
(BLAST)
001: MSLSTVDIVE AQSKYGFWGW NLWRQPIGFI VFLISSLVEC ERLPFDLLEA EEELVARYQT EYAGIKLCLF YIASYLNLLV SSLFVTNLYL GGWNLSIPYI
101: FVPDIFGINK GGKV
Best Arabidopsis Sequence Match ( ATCG01100.1 )
(BLAST)
001: MIIYATAVQT INSFVKLESL KEVYGLIWIF VPIFSLVLGI ITGVLVIVWL EREISAGIQQ RIGPEYAGPL GILQALADGT KLLFKENLRP SRGNTPLFSI
101: GPSIAVISIL LSYSVIPFSN HLVLADLNIG IFLWIAISSI APIGLLMSGY GSNNKYSFLG GLRAAAQSIS YEIPLTLCVL SISLLSNSLS TVDIVEAQSK
201: YGFWGWNLWR QPIGFIIFLI SSLAECERLP FDLPEAEEEL IAGYQTEYSG IKFGLFYVAS YLNLLISSLF VTVLYLGGWN ISIPYISILE LFQRDQIFGT
301: TIGIFITLAK TYLFLFVSIA TRWTLPRLRM DQLLNLGWKF LLPISLGNLL LTTSFQLFSL
Arabidopsis Description
NDHANAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q37165]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.