Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AGP50810 | Barley | plasma membrane | 50.0 | 20.25 |
| HORVU7Hr1G107860.1 | Barley | plasma membrane | 74.24 | 17.13 |
| HORVU1Hr1G048090.1 | Barley | vacuole | 74.24 | 13.54 |
| HORVU5Hr1G064770.1 | Barley | vacuole | 74.24 | 13.54 |
| HORVU0Hr1G019930.1 | Barley | golgi, mitochondrion, vacuole | 0.0 | 0.0 |
| HORVU2Hr1G004300.1 | Barley | golgi, mitochondrion, plastid, vacuole | 0.0 | 0.0 |
| HORVU3Hr1G044940.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 0.0 | 0.0 |
| HORVU3Hr1G075010.1 | Barley | cytosol, golgi, plasma membrane | 0.0 | 0.0 |
| HORVU4Hr1G027700.1 | Barley | vacuole | 0.0 | 0.0 |
| HORVU4Hr1G052660.1 | Barley | golgi, mitochondrion, vacuole | 0.0 | 0.0 |
| HORVU5Hr1G005420.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU6Hr1G039110.1 | Barley | extracellular, golgi, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G087850.1 | EnsemblPlantsGene:HORVU6Hr1G087850 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:NADH_UbQ_OxRdtase_su1/FPO | PANTHER:PTHR11432 | PANTHER:PTHR11432:SF13 | PFAM:PF00146 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000B471AF5 | UniProt:A0A287V2S2 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:565280854..565283253
Molecular Weight (calculated)
7203.2 Da
IEP (calculated)
10.871
GRAVY (calculated)
0.715
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MNKAVGILEM TMGIFITLTK AYLFLFISIT IRWTLPRMRM DQLGGGGGPI SLGNLLLTTS SQLVSL
001: SSMGSALFFL GEYANMILMS GPCTLFFPGG WPPILDLPIF KKIPGSIWFS IKVLLFLFLY IWVRAAFPRY RYDQLMGLGR KVFLPLSLAR VVPVSGLLVT
101: FQWLP
101: FQWLP
Arabidopsis Description
NAD1CNADH dehydrogenase 1C [Source:TAIR;Acc:ATMG00516]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.