Factsheet for TraesCS4B01G117500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, vacuole

Predictor Summary:

mitochondrion 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G114500.1	Wheat	mitochondrion	94.41	94.41
TraesCS2B01G064500.1	Wheat	golgi, mitochondrion, vacuole	93.17	93.75
TraesCS4D01G138500.1	Wheat	mitochondrion	93.17	93.17
TraesCSU01G180100.1	Wheat	golgi, mitochondrion, vacuole	83.23	93.06
TraesCS7B01G486900.1	Wheat	golgi, mitochondrion, vacuole	83.23	93.06
TraesCS3B01G013800.1	Wheat	golgi, mitochondrion, vacuole	83.23	93.06
TraesCS6B01G338500.1	Wheat	endoplasmic reticulum, golgi, vacuole	82.61	92.36
Zm00001d046083_P001	Maize	mitochondrion	91.93	91.93
AT2G07785.1	Thale cress	golgi, mitochondrion, plastid, vacuole	56.52	91.92
TraesCS5B01G339500.1	Wheat	mitochondrion	81.99	91.67
VIT_00s0396g00020.t01	Wine grape	plastid	55.9	90.91
TraesCS5B01G030900.1	Wheat	mitochondrion	88.82	88.82
GSMUA_AchrUn_...	Banana	golgi	63.35	82.93
Solyc05g023920.1.1	Tomato	plastid	48.45	78.79
ATMG01275.1	Thale cress	endoplasmic reticulum	56.52	70.54
CDY45488	Canola	golgi, mitochondrion, nucleus, plastid	63.98	64.78
CDY36712	Canola	golgi, mitochondrion, nucleus, plastid	63.98	64.78
BAC19852	Rice	plasma membrane	65.84	32.62
TraesCS1B01G405800.1	Wheat	endoplasmic reticulum, golgi, vacuole	25.47	21.93
TraesCS7B01G080400.1	Wheat	vacuole	24.84	21.39
TraesCS3B01G582300.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G582200.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G459500.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS5B01G250500.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G189200.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS1B01G405700.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS1B01G087800.1	Wheat	extracellular, golgi	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS4B01G117500.1	EnsemblPlantsGene:TraesCS4B01G117500	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	PANTHER:PTHR11432	PANTHER:PTHR11432:SF3	PFAM:PF00146
ScanProsite:PS00667	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4B:+:136489474..136489960

Molecular Weight (calculated)

17799.9 Da

IEP (calculated)

10.454

GRAVY (calculated)

0.384

Length

161 amino acids

Sequence
(BLAST)

001: MAFVQRRKGP DVVGSFGLLQ PLVDGLKLIL KEPISPSSAN FSLFRMAPVA TFMLSLVTWA VVPFDYGMVL SDPNIGLLYL FAISLLGVYG IIIAGWSSKT
101: GGDRSVAYDI RTNWSKWVCA AGVERSTLHR CGLTRLGLIN PFFHSSRGRS LFWAVIEKWK S

Best Arabidopsis Sequence Match ( AT2G07785.1 )
(BLAST)

1: MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL SDPNIGLLYL FAISSLGVYG IIIAGRSSN

Arabidopsis Description

NADH dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q3EC42]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.