Factsheet for TraesCS6B01G338500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

mitochondrion 1
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G486900.1	Wheat	golgi, mitochondrion, vacuole	97.92	97.92
TraesCS3B01G013800.1	Wheat	golgi, mitochondrion, vacuole	97.92	97.92
TraesCS5B01G339500.1	Wheat	mitochondrion	96.53	96.53
HORVU2Hr1G004300.1	Barley	golgi, mitochondrion, plastid, vacuole	68.06	96.08
HORVU6Hr1G039110.1	Barley	extracellular, golgi, vacuole	22.92	94.29
AT2G07785.1	Thale cress	golgi, mitochondrion, plastid, vacuole	63.89	92.93
VIT_00s0396g00020.t01	Wine grape	plastid	63.19	91.92
HORVU3Hr1G044940.1	Barley	endoplasmic reticulum, extracellular, vacuole	34.03	85.96
TraesCS1D01G258700.1	Wheat	mitochondrion	95.83	85.71
GSMUA_AchrUn_...	Banana	golgi	72.22	84.55
TraesCS2B01G064500.1	Wheat	golgi, mitochondrion, vacuole	93.06	83.75
TraesCS4B01G117500.1	Wheat	golgi, mitochondrion, vacuole	92.36	82.61
TraesCS5B01G030900.1	Wheat	mitochondrion	90.97	81.37
Solyc05g023920.1.1	Tomato	plastid	54.17	78.79
ATMG01275.1	Thale cress	endoplasmic reticulum	63.89	71.32
CDY45488	Canola	golgi, mitochondrion, nucleus, plastid	72.92	66.04
CDY36712	Canola	golgi, mitochondrion, nucleus, plastid	72.92	66.04
TraesCS1B01G405800.1	Wheat	endoplasmic reticulum, golgi, vacuole	29.17	22.46
TraesCS7B01G080400.1	Wheat	vacuole	28.47	21.93
TraesCS1B01G405700.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS1B01G087800.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G189200.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G459500.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G582200.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS3B01G582300.1	Wheat	extracellular, golgi	0.0	0.0
TraesCS5B01G250500.1	Wheat	extracellular, golgi	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6B01G338500.1	EnsemblPlantsGene:TraesCS6B01G338500	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_su1/FPO	InterPro:NADH_UbQ_OxRdtase_su1_CS	PANTHER:PTHR11432	PANTHER:PTHR11432:SF3	PFAM:PF00146
ScanProsite:PS00667	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6B:+:596621323..596621809

Molecular Weight (calculated)

15676.3 Da

IEP (calculated)

10.631

GRAVY (calculated)

0.393

Length

144 amino acids

Sequence
(BLAST)

001: MAFVQRQKGP DVVGSFGLLQ PLADGLKLIL KEPISPSSAN FSLFRMAPVA TFMLSLVAWV VVPFDYGMVL SDPNIGLLYL FAISSLGVYG IIIAGWSSKT
101: GGGRSVAYDI RTNWSKMGLG LINPFFHSSR GRSLFRAGIE KWKS

Best Arabidopsis Sequence Match ( AT2G07785.1 )
(BLAST)

1: MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL SDPNIGLLYL FAISSLGVYG IIIAGRSSN

Arabidopsis Description

NADH dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q3EC42]
SUBAcon: [mitochondrion,golgi,plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.