CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92927
EER94961
EER99083
EER99617
EES01418
EES03003
EES03536
EES03615
EES06013
EES06863
EES13880
EES14275
EES15199
EES18401
EES18559
KXG22309
KXG30817
KXG36814
KXG37457
KXG38809
OQU89974
OQU91338
OQU91808

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	KXG37457	AT1G79010.1	12837548
AT3G47930.1	EER92927	AT2G02050.1	12837548
AT3G47930.1	EES06013	AT2G20360.1	12837548
AT3G47930.1	EES01418	AT2G31490.1	12837548
AT3G47930.1	EES03615	AT2G31490.1	12837548
AT3G47930.1	OQU91338	AT2G31490.1	12837548
AT3G47930.1	EER99083	AT2G42310.1	12837548
AT3G47930.1	EES14275	AT2G42310.1	12837548
AT3G47930.1	EES15199	AT2G47690.1	12837548
AT3G47930.1	KXG38809	AT3G03100.1	12837548
AT3G47930.1	EES18401	AT3G08610.1	12837548
AT3G47930.1	EES03003	AT3G12260.1	12837548
AT3G47930.1	EES06863	AT3G48680.1	12837548
AT3G47930.1	EER99083	AT3G57785.1	12837548
AT3G47930.1	EES14275	AT3G57785.1	12837548
AT3G47930.1	KXG22309	AT4G02580.1	12837548
AT3G47930.1	EES13880	AT4G16450.1	12837548
AT3G47930.1	OQU89974	AT4G20150.1	12837548
AT3G47930.1	KXG36814	AT5G08530.1	12837548
AT3G47930.1	EES03536	AT5G11770.1	12837548
AT3G47930.1	EES18559	AT5G11770.1	12837548
AT3G47930.1	EER94961	AT5G52840.1	12837548
AT3G47930.1	EER99617	AT5G67590.1	12837548
AT3G47930.1	OQU91808	ATMG00510.1	12837548
AT3G47930.1	KXG30817	ATMG00513.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0139600-01	Rice	mitochondrion	85.98	86.28
Os11t0143500-01	Rice	mitochondrion	85.81	86.11
TraesCS5D01G140400.2	Wheat	mitochondrion	84.79	84.93
HORVU5Hr1G043060.2	Barley	mitochondrion	84.79	84.93
TraesCS5B01G132600.1	Wheat	plastid	84.44	84.59
TraesCS5A01G132300.2	Wheat	mitochondrion	83.59	79.38
KRH71746	Soybean	mitochondrion	70.77	70.89
Solyc10g079470.2.1	Tomato	nucleus	70.43	70.07
VIT_08s0007g05710.t01	Wine grape	mitochondrion	72.14	69.29
PGSC0003DMT400020997	Potato	mitochondrion	68.89	68.42
CDY24145	Canola	mitochondrion	69.57	67.83
Bra018100.1-P	Field mustard	mitochondrion	69.4	67.55
CDY36916	Canola	mitochondrion	69.4	67.55
AT3G47930.1	Thale cress	mitochondrion	70.09	67.21
KRH33172	Soybean	mitochondrion	65.64	65.87
GSMUA_Achr6P21390_001	Banana	cytosol	47.35	63.1
Zm00001d004956_P001	Maize	mitochondrion	94.53	61.17

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	Gene3D:3.30.43.10	Gene3D:3.30.465.10	UniProt:A0A1B6PPW0	InterPro:ALO
InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	InterPro:FAD_lactone_oxidase	InterPro:GL_DH	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003885	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0016020	GO:GO:0016491	GO:GO:0016614	GO:GO:0016633	GO:GO:0016899	GO:GO:0050660
GO:GO:0055114	GO:GO:0071949	GO:GO:0080049	InterPro:IPR016166	InterPro:IPR016167	EnsemblPlants:KXG27706
ProteinID:KXG27706	ProteinID:KXG27706.1	InterPro:Oxid_FAD_bind_N	PFAM:PF01565	PFAM:PF04030	PIRSF:PIRSF000136
PFscan:PS51387	PANTHER:PTHR43762	PANTHER:PTHR43762:SF1	MetaCyc:PWY-882	EnsemblPlantsGene:SORBI_3005G031000	SUPFAM:SSF56176
TIGRFAMs:TIGR01676	UniParc:UPI0001C80510	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2767888..2771582

Molecular Weight (calculated)

65790.7 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.433

Length

585 amino acids

Sequence
(BLAST)

001: MRHVLLSRFL LRRQQGGGMP TAHHHHLLRA LSSAPSPVSS DAELRKYAGY ALLLVGCGAA TYYSFPLPAD ALHKKAVPFR YAPLPEDLHA VSNWSGTHEV
101: HARVLLQPDS LPALEGALAA AHKERRKLRP LGSGLSPNGI ALSRAGMVNL ALMDKVLDVD AKKKTVTVQA GIRVAELVDT LREHGLTLQN FASIREQQVG
201: GFTQVGAHGT GATLPPVDEQ VISMKLVTPA KGTIELSREK DPELFYLARC GLGGLGVVAE VTLQCVERHQ LVEHTFVSNA DEVKKNHKKW LSENKHIKYL
301: WIPYTDTVVV VQCNPPSKWR TPKLGSKYGN DEALQHVRDL YRESLKKYRT EAESNDPDID TLSFTELRDK LLALDPLDKD HVMKINKAEA EYWKKSEGYR
401: MGWSDEILGF DCGGQQWVSE NCFPAGTLAT PSMKDLDYID KLLRLIEKEE IPAPGPIEQR WTARSKSPMS PASSSEEEDI FSWVGIIMYL PTSDARQRKE
501: ITEEFFNYRS LAQSLWDDYS AYEHWAKIEV PKDKDELAEV QARLRKRFPV DAYNKARLEL DPHKVLSNAK LEKLFPVLEP VHQTK

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.