Factsheet for Os12t0139600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
BAC19852
BAC19900
Os01t0720300-00
Os01t0732100-00
Os01t0750800-02
Os02t0508000-01
Os02t0800500-02
Os02t0801300-01
Os02t0816800-01
Os03t0129900-01
Os03t0313000-01
Os05t0481600-01
Os05t0509200-01
Os05t0533700-01
Os07t0498300-01
Os07t0585800-01
Os07t0645400-01
Os08t0431500-01
Os08t0505001-01
Os08t0556600-01
Os09t0487500-01
Os10t0579300-01
Os12t0422971-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	Os03t0129900-01	AT2G02050.1	12837548
AT3G47930.1	Os02t0800500-02	AT2G20360.1	12837548
AT3G47930.1	Os02t0801300-01	AT2G20360.1	12837548
AT3G47930.1	Os02t0816800-01	AT2G20360.1	12837548
AT3G47930.1	Os01t0732100-00	AT2G31490.1	12837548
AT3G47930.1	Os01t0750800-02	AT2G31490.1	12837548
AT3G47930.1	Os08t0505001-01	AT2G42310.1	12837548
AT3G47930.1	Os09t0487500-01	AT2G42310.1	12837548
AT3G47930.1	Os08t0556600-01	AT2G47690.1	12837548
AT3G47930.1	Os10t0579300-01	AT3G03100.1	12837548
AT3G47930.1	Os05t0481600-01	AT3G08610.1	12837548
AT3G47930.1	Os02t0508000-01	AT3G48680.1	12837548
AT3G47930.1	Os08t0505001-01	AT3G57785.1	12837548
AT3G47930.1	Os09t0487500-01	AT3G57785.1	12837548
AT3G47930.1	Os05t0509200-01	AT4G02580.1	12837548
AT3G47930.1	Os08t0431500-01	AT4G16450.1	12837548
AT3G47930.1	Os07t0498300-01	AT4G20150.1	12837548
AT3G47930.1	Os07t0645400-01	AT5G08530.1	12837548
AT3G47930.1	Os01t0720300-00	AT5G11770.1	12837548
AT3G47930.1	Os05t0533700-01	AT5G11770.1	12837548
AT3G47930.1	Os03t0313000-01	AT5G52840.1	12837548
AT3G47930.1	Os07t0585800-01	AT5G67590.1	12837548
AT3G47930.1	BAC19900	ATMG00070.1	12837548
AT3G47930.1	Os12t0422971-00	ATMG00070.1	12837548
AT3G47930.1	BAC19852	ATMG01275.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0143500-01	Rice	mitochondrion	98.28	98.28
HORVU5Hr1G043060.2	Barley	mitochondrion	89.54	89.38
TraesCS5D01G140400.2	Wheat	mitochondrion	89.19	89.04
TraesCS5B01G132600.1	Wheat	plastid	89.02	88.87
KXG27706	Sorghum	mitochondrion	86.28	85.98
TraesCS5A01G132300.2	Wheat	mitochondrion	88.34	83.6
KRH71746	Soybean	mitochondrion	71.53	71.4
Solyc10g079470.2.1	Tomato	nucleus	69.81	69.22
VIT_08s0007g05710.t01	Wine grape	mitochondrion	71.87	68.8
PGSC0003DMT400020997	Potato	mitochondrion	68.1	67.4
Bra018100.1-P	Field mustard	mitochondrion	68.95	66.89
CDY36916	Canola	mitochondrion	68.78	66.72
CDY24145	Canola	mitochondrion	68.44	66.5
AT3G47930.1	Thale cress	mitochondrion	69.47	66.39
KRH33172	Soybean	mitochondrion	66.04	66.04
GSMUA_Achr6P21390_001	Banana	cytosol	47.68	63.33
Zm00001d004956_P001	Maize	mitochondrion	86.28	55.64

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	Gene3D:3.30.43.10	Gene3D:3.30.465.10	EntrezGene:4351464	ProteinID:ABA96408.1
EMBL:AK241565	InterPro:ALO	ProteinID:BAF29139.2	ProteinID:BAT15829.1	ProteinID:EAZ19601.1	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	InterPro:FAD_lactone_oxidase	InterPro:GL_DH	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003885	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016614	GO:GO:0016633
GO:GO:0016899	GO:GO:0019853	GO:GO:0031966	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949
InterPro:IPR016166	InterPro:IPR016167	EnsemblPlantsGene:Os12g0139600	EnsemblPlants:Os12t0139600-01	InterPro:Oxid_FAD_bind_N	PFAM:PF01565
PFAM:PF04030	PIRSF:PIRSF000136	PFscan:PS51387	PANTHER:PTHR43762	PANTHER:PTHR43762:SF1	UniProt:Q2QXY1
SUPFAM:SSF56176	TIGRFAMs:TIGR01676	UniParc:UPI0000681A92	RefSeq:XP_015619621.1	SEG:seg	:

Description

GLDH2L-Galactono-1,4-lactone dehydrogenase. (Os12t0139600-01)

Coordinates

chr12:-:1922267..1926698

Molecular Weight (calculated)

65705.7 Da

IEP (calculated)

8.098

GRAVY (calculated)

-0.410

Length

583 amino acids

Sequence
(BLAST)

001: MRRLLLAGIL RRASSSPSSH HHLHLVRALS ASSPLPASDA DLRKYAGYAL LLLGCGAATY YSFPLPPDAL HKKAVPFKYA PLPDDLHAVS NWSATHEVHT
101: RVLLQPDSLP VLHDALAAAH GERRKLRPLG SGLSPNGLAL SRAGMVNLAL MDKVLDVDAK KKTVTVQAGI RVAELVDTLR EHGLTLQNFA SIREQQVGGI
201: IQVGAHGTGA RLPPIDEQVI SMKLVTPAKG TIELSREKDP DLFYLARCGL GGLGVVAEVT LQCVERHQLI EHTFVSSADE VKKNHKKWLS ENKHIKYLWI
301: PYTDTVVVVQ CNPPSRWRTP KFTSKYGKDE AIQHVRDLYR ESLKKYRTKA ESNDPEVDQL SFTELRDRLL ALDPLDKDHV IRINKAEAEY WKKSEGYRMG
401: WSDEILGFDC GGQQWVSETC FPAGTLAKPN MKDLDYIEEL LQLIEKEDIP APAPIEQRWT ACSRSPMSPA SSSQEDDIFS WVGIIMYLPT SDARQRKEIT
501: EEFFNYRSKT QTNLWDGYSA YEHWAKIEVP KDKDELTELL ARLRKRFPVD AYNKARMELD PNKVLSNAKL EKLFPVTEVQ HVK

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.