Factsheet for Solyc05g046390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, extracellular, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31490.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT2G31490.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT2G31490.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT2G31490.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G31490.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49068	Soybean	cytosol	79.69	68.0
GSMUA_Achr3P15720_001	Banana	cytosol	73.44	66.2
VIT_12s0055g00700.t01	Wine grape	cytosol	71.88	64.79
Bra022843.1-P	Field mustard	cytosol	68.75	64.71
CDY10808	Canola	cytosol	70.31	63.38
Os01t0750800-02	Rice	cytosol	70.31	63.38
AT2G31490.1	Thale cress	cytosol	70.31	63.38
CDX84783	Canola	cytosol	70.31	63.38
CDY34488	Canola	cytosol	70.31	63.38
CDY23940	Canola	cytosol	70.31	63.38
CDY19085	Canola	cytosol	70.31	63.38
CDY15390	Canola	cytosol	70.31	63.38
CDY10807	Canola	cytosol	70.31	63.38
EES01418	Sorghum	cytosol	68.75	61.97
TraesCS3A01G290400.1	Wheat	cytosol	68.75	61.97
TraesCS3B01G325200.1	Wheat	cytosol	68.75	61.97
TraesCS3D01G290200.1	Wheat	cytosol	68.75	61.97
EES03615	Sorghum	cytosol	67.19	60.56
Zm00001d012741_P001	Maize	cytosol	68.75	58.67
Solyc09g059220.1.1	Tomato	cytosol	62.5	54.05
Os01t0732100-00	Rice	mitochondrion	68.75	51.76
HORVU3Hr1G071870.1	Barley	cytosol, golgi, plasma membrane	68.75	43.56
Zm00001d012469_P001	Maize	cytosol	68.75	32.12
Zm00001d012742_P001	Maize	cytosol	68.75	32.12
OQU91338	Sorghum	plastid	57.81	30.08

Protein Annotations

EnsemblPlants:Solyc05g046390.2.1	EnsemblPlantsGene:Solyc05g046390.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR35479
PANTHER:PTHR35479:SF2	TMHMM:TMhelix	UniParc:UPI0002766AD0	UniProt:K4C0X2	MapMan:35.2	:

Description

No Description!

Coordinates

chr5:-:58818932..58820215

Molecular Weight (calculated)

7433.1 Da

IEP (calculated)

8.499

GRAVY (calculated)

0.077

Length

64 amino acids

Sequence
(BLAST)

1: MGGGMEYNKN KWIEEWGAAR ENLELNFRWT RRNLAIVGIF GIAIPVLVYK GIVKEFVHFF LECG

Best Arabidopsis Sequence Match ( AT2G31490.1 )
(BLAST)

1: MGGGMETNKN KFIEDWGSAR ENLEHNFRWT RRNFALIGIF GIALPIIVYK GIVKDFHMQD EDAGRPHRKF L

Arabidopsis Description

AT2G31490 protein [Source:UniProtKB/TrEMBL;Acc:Q9SIQ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.