Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 | |
| VIT_09s0002g03770.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31490.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT2G31490.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT2G31490.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P15720_001 | Banana | cytosol | 83.1 | 83.1 |
| Bra018237.1-P | Field mustard | cytosol | 81.69 | 81.69 |
| AT2G31490.1 | Thale cress | cytosol | 81.69 | 81.69 |
| CDY34488 | Canola | cytosol | 81.69 | 81.69 |
| CDY23940 | Canola | cytosol | 81.69 | 81.69 |
| CDY19085 | Canola | cytosol | 81.69 | 81.69 |
| CDY15390 | Canola | cytosol | 81.69 | 81.69 |
| CDY10808 | Canola | cytosol | 81.69 | 81.69 |
| CDY10807 | Canola | cytosol | 81.69 | 81.69 |
| CDX84783 | Canola | cytosol | 81.69 | 81.69 |
| Os01t0750800-02 | Rice | cytosol | 80.28 | 80.28 |
| EES01418 | Sorghum | cytosol | 78.87 | 78.87 |
| EES03615 | Sorghum | cytosol | 78.87 | 78.87 |
| TraesCS3A01G290400.1 | Wheat | cytosol | 76.06 | 76.06 |
| TraesCS3B01G325200.1 | Wheat | cytosol | 76.06 | 76.06 |
| TraesCS3D01G290200.1 | Wheat | cytosol | 76.06 | 76.06 |
| Zm00001d012741_P001 | Maize | cytosol | 78.87 | 74.67 |
| Solyc05g046390.2.1 | Tomato | plastid | 64.79 | 71.88 |
| Os01t0732100-00 | Rice | mitochondrion | 78.87 | 65.88 |
| KRH49068 | Soybean | cytosol | 64.79 | 61.33 |
| Solyc09g059220.1.1 | Tomato | cytosol | 57.75 | 55.41 |
| HORVU3Hr1G071870.1 | Barley | cytosol, golgi, plasma membrane | 76.06 | 53.47 |
| Zm00001d012742_P001 | Maize | cytosol | 64.79 | 33.58 |
| Zm00001d012469_P001 | Maize | cytosol | 63.38 | 32.85 |
| OQU91338 | Sorghum | plastid | 50.7 | 29.27 |
Protein Annotations
| EntrezGene:100258994 | wikigene:100258994 | MapMan:35.2 | EMBL:AM464355 | ProteinID:CAN63643 | ProteinID:CAN63643.1 |
| ProteinID:CBI20027 | ProteinID:CBI20027.3 | UniProt:D7STB3 | EMBL:FN595228 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0031966 | GO:GO:0045271 | EntrezGene:LOC100258994 | wikigene:LOC100258994 | PANTHER:PTHR35479 | PANTHER:PTHR35479:SF3 |
| TMHMM:TMhelix | UniParc:UPI00015CBA2C | ArrayExpress:VIT_12s0055g00700 | EnsemblPlantsGene:VIT_12s0055g00700 | EnsemblPlants:VIT_12s0055g00700.t01 | RefSeq:XP_002269616 |
| RefSeq:XP_002269616.1 | RefSeq:XP_003633354 | RefSeq:XP_003633354.1 | : | : | : |
Description
No Description!
Coordinates
chr12:-:13826525..13828578
Molecular Weight (calculated)
8275.0 Da
IEP (calculated)
9.808
GRAVY (calculated)
-0.404
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGMEAHKN KFIEEWGAAR ENLEYNFRWT RRNLVLAGIF GVAVPILVYR GIVKEFHMQD EDAGRPHRKF L
1: MGGGMETNKN KFIEDWGSAR ENLEHNFRWT RRNFALIGIF GIALPIIVYK GIVKDFHMQD EDAGRPHRKF L
Arabidopsis Description
AT2G31490 protein [Source:UniProtKB/TrEMBL;Acc:Q9SIQ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.