Factsheet for Solyc03g120880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010650.2.1
Solyc01g050070.2.1
Solyc01g080590.2.1
Solyc01g107150.2.1
Solyc01g110290.2.1
Solyc02g078010.2.1
Solyc03g082600.2.1
Solyc03g096810.2.1
Solyc03g097170.2.1
Solyc03g118130.2.1
Solyc04g049180.2.1
Solyc05g007150.2.1
Solyc05g008800.2.1
Solyc06g053660.2.1
Solyc06g060550.2.1
Solyc06g061280.2.1
Solyc06g065400.2.1
Solyc07g049730.2.1
Solyc07g052430.2.1
Solyc07g052440.2.1
Solyc07g052680.1.1
Solyc07g061970.2.1
Solyc07g064470.2.1
Solyc08g007510.2.1
Solyc08g076790.2.1
Solyc08g077730.2.1
Solyc08g078060.2.1
Solyc08g080500.2.1
Solyc10g006310.2.1
Solyc10g054130.1.1
Solyc10g079040.1.1
Solyc10g079060.1.1
Solyc11g018620.1.1
Solyc12g011440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16310.1	Solyc06g053660.2.1	AT1G04340.1	21798944
AT3G16310.1	Solyc01g010650.2.1	AT1G14360.1	21798944
AT3G16310.1	Solyc05g007150.2.1	AT1G14360.1	21798944
AT3G16310.1	Solyc05g008800.2.1	AT1G15080.1	21798944
AT3G16310.1	Solyc07g061970.2.1	AT1G17080.1	21798944
AT3G16310.1	Solyc12g011440.1.1	AT1G17080.1	21798944
AT3G16310.1	Solyc02g078010.2.1	AT1G28250.1	21798944
AT3G16310.1	Solyc01g050070.2.1	AT1G55535.1	21798944
AT3G16310.1	Solyc06g060550.2.1	AT1G62880.1	21798944
AT3G16310.1	Solyc08g007510.2.1	AT1G62880.1	21798944
AT3G16310.1	Solyc08g080500.2.1	AT1G63120.1	21798944
AT3G16310.1	Solyc01g107150.2.1	AT2G14835.2	21798944
AT3G16310.1	Solyc03g097170.2.1	AT2G23910.1	21798944
AT3G16310.1	Solyc06g061280.2.1	AT2G23910.1	21798944
AT3G16310.1	Solyc08g076790.2.1	AT2G23910.1	21798944
AT3G16310.1	Solyc07g052430.2.1	AT2G32380.1	21798944
AT3G16310.1	Solyc07g052440.2.1	AT2G32380.1	21798944
AT3G16310.1	Solyc07g049730.2.1	AT2G32580.1	21798944
AT3G16310.1	Solyc08g077730.2.1	AT2G35170.1	21798944
AT3G16310.1	Solyc04g049180.2.1	AT3G07950.1	21798944
AT3G16310.1	Solyc07g064470.2.1	AT3G20510.1	21798944
AT3G16310.1	Solyc10g006310.2.1	AT3G20510.1	21798944
AT3G16310.1	Solyc07g052680.1.1	AT3G22070.1	21798944
AT3G16310.1	Solyc06g065400.2.1	AT4G09580.1	21798944
AT3G16310.1	Solyc11g018620.1.1	AT4G09580.1	21798944
AT3G16310.1	Solyc03g096810.2.1	AT4G10430.1	21798944
AT3G16310.1	Solyc08g078060.2.1	AT4G16840.1	21798944
AT3G16310.1	Solyc01g110290.2.1	AT4G34640.1	21798944
AT3G16310.1	Solyc10g054130.1.1	AT4G34640.1	21798944
AT3G16310.1	Solyc10g079040.1.1	AT4G34640.1	21798944
AT3G16310.1	Solyc10g079060.1.1	AT4G34640.1	21798944
AT3G16310.1	Solyc01g080590.2.1	AT5G18850.1	21798944
AT3G16310.1	Solyc06g053660.2.1	AT5G43460.1	21798944
AT3G16310.1	Solyc03g118130.2.1	AT5G51010.1	21798944
AT3G16310.1	Solyc03g082600.2.1	AT5G53560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006495	Potato	mitochondrion, plastid	65.34	97.91
VIT_09s0002g03770.t01	Wine grape	mitochondrion, plastid	45.82	72.56
KRH23409	Soybean	mitochondrion	45.22	68.58
KRH09922	Soybean	endoplasmic reticulum, nucleus	45.02	68.28
AT3G16310.1	Thale cress	plastid	43.03	65.65
Bra027174.1-P	Field mustard	plastid	43.23	64.97
CDY30157	Canola	plastid	44.42	52.59
GSMUA_Achr6P14800_001	Banana	plastid	23.11	51.33
TraesCS3A01G313000.1	Wheat	nucleus	29.88	46.88
TraesCS3B01G158900.1	Wheat	nucleus	29.68	46.56
TraesCS3D01G141300.1	Wheat	nucleus	29.28	46.23
HORVU3Hr1G026980.2	Barley	nucleus, plastid	28.49	45.98
Zm00001d008871_P001	Maize	mitochondrion	28.69	44.72
GSMUA_Achr4P15460_001	Banana	mitochondrion, plastid	31.87	44.69
EES02290	Sorghum	nucleus, plastid	28.49	44.41
Os01t0200500-01	Rice	nucleus	28.88	44.34
GSMUA_Achr4P08270_001	Banana	mitochondrion	24.1	42.46
HORVU1Hr1G076010.1	Barley	plastid	22.71	34.44
TraesCS3B01G308400.1	Wheat	plastid	21.51	34.29
TraesCS3D01G274500.1	Wheat	plastid	21.51	34.29
TraesCS3A01G274800.1	Wheat	plastid	21.12	33.87
TraesCS1D01G342600.1	Wheat	plastid	22.91	33.82
HORVU3Hr1G071060.1	Barley	plastid	20.92	33.65
EES19830	Sorghum	mitochondrion	21.71	33.44
CDX97739	Canola	plastid	43.82	32.98
Zm00001d038803_P001	Maize	mitochondrion	21.12	32.92
Os05t0520100-00	Rice	mitochondrion	21.31	32.33
Zm00001d010783_P001	Maize	plastid	21.71	31.5
TraesCS1A01G340600.1	Wheat	plastid	21.12	31.36

Protein Annotations

MapMan:23.5.1.1.6.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003697
GO:GO:0005215	GO:GO:0005487	GO:GO:0005488	GO:GO:0005543	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006139	GO:GO:0006355
GO:GO:0006607	GO:GO:0006810	GO:GO:0006999	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0044613	GO:GO:0044615	GO:GO:0051028
InterPro:IPR007846	InterPro:IPR012677	UniProt:K4BMN7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05172	PFscan:PS51472
PANTHER:PTHR21527	InterPro:RBD_domain_sf	InterPro:RRM_NUP35_dom	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc03g120880.2	EnsemblPlants:Solyc03g120880.2.1
UniParc:UPI0002766F4A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:69108003..69114219

Molecular Weight (calculated)

55118.3 Da

IEP (calculated)

7.971

GRAVY (calculated)

-0.423

Length

502 amino acids

Sequence
(BLAST)

001: MANFCCSIEM EPKTLSQGQL NLAREVAVDI VQNTQLDEAS NLFQEGVKGV VQIKEGLVVI EEAESVVEED CLGKTNVVIE ASCQCAYPSA ITDDSPDQSK
101: FKEPLSCSTQ RTVSVIWLKA TAGLYLNSFT QYYNSRVFRS RALQPKPPIF KSQFFVFQYI QIGLRERMST AVRTPKTGRQ SLFFQDLATP ISSRKSGSKF
201: NTPGQAAAVS ALWRENFASS DLPPPPVFTL EDRSDVSPES GIPEYITSPE IKSDPRTPVL NSGREFSTPK SKSEASTSYA LMGKQQQQSK QSPLPSLTWW
301: SPAKGSGSAE QDDKDKGSPV EGVVHPGALI TLPPPREVAR PEIRKNSIPV GNLNEEEWVT VYGFSPIDTN SVLREFEKCG VILKHILGPR DANWMHILYQ
401: NRADAQKALN KNGMQINGVL MIGVKPVDPT QRQALDDRLN KQGFIPLPHA PTSKSNDPTP FRTSSQPCYL QNGSNSAKQS SGSVATPARS VVSKIVDLMF
501: GV

Best Arabidopsis Sequence Match ( AT3G16310.1 )
(BLAST)

001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV

Arabidopsis Description

NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.