Factsheet for Solyc10g079040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
endoplasmic reticulum 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G34640.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079060.1.1	Tomato	cytosol	81.29	59.02
Bra017668.1-P	Field mustard	cytosol	41.29	52.67
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	67.74	51.09
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	66.77	50.12
KRH24387	Soybean	cytosol	66.77	50.12
Bra017667.1-P	Field mustard	cytosol	61.61	49.35
CDY45323	Canola	cytosol	34.52	49.08
Bra011548.1-P	Field mustard	cytosol	62.26	48.49
CDX75450	Canola	cytosol	62.26	48.49
CDX69075	Canola	cytosol	61.94	48.24
GSMUA_Achr4P17290_001	Banana	cytosol	45.48	48.12
VIT_03s0038g00450.t01	Wine grape	cytosol	63.55	47.7
CDX76294	Canola	cytosol	61.29	47.5
Solyc10g054130.1.1	Tomato	unclear	65.81	46.79
Os03t0805100-01	Rice	cytosol	60.65	46.65
EER93257	Sorghum	cytosol	59.68	45.91
CDX75451	Canola	cytosol	60.97	45.76
Zm00001d013048_P005	Maize	cytosol	59.03	45.64
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	60.65	45.52
TraesCS5D01G465000.1	Wheat	cytosol	59.03	45.3
CDX72494	Canola	cytosol	57.42	45.06
TraesCS5B01G464600.1	Wheat	cytosol	58.71	45.05
Bra011549.1-P	Field mustard	cytosol	60.65	44.98
AT4G34640.1	Thale cress	cytosol	59.35	44.88
TraesCS5A01G454500.1	Wheat	cytosol	58.39	44.8
CDY17472	Canola	cytosol	61.29	44.6
CDX72493	Canola	cytosol	61.29	44.6
CDX69076	Canola	cytosol, plasma membrane, plastid	60.97	44.16
Os07t0200700-01	Rice	cytosol	58.39	44.15
Zm00001d034516_P001	Maize	cytosol	60.0	43.76
CDY45322	Canola	cytosol	57.42	43.73
Bra034641.1-P	Field mustard	cytosol	60.32	42.4
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	15.16	41.59
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	61.29	39.5
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	6.45	37.74
TraesCS5D01G032600.1	Wheat	cytosol	20.97	36.72
HORVU5Hr1G109300.4	Barley	mitochondrion	57.74	34.76

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016740
GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4D2E5	PFAM:PF00494
PANTHER:PTHR11626	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc10g079040.1	EnsemblPlants:Solyc10g079040.1.1	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like
TIGRFAMs:TIGR01559	InterPro:Trans_IPPS_HH	UniParc:UPI000276A57F	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:60673746..60676902

Molecular Weight (calculated)

36069.6 Da

IEP (calculated)

8.125

GRAVY (calculated)

0.139

Length

310 amino acids

Sequence
(BLAST)

001: MGETIKHPDE FYPLMKLMLL AKRVEKKTSV WLLQPHWAFC YATLRKVSRS FALVIQQLPS DLRDVVCVYY LVLRALDTVG GTMAFKVLMD QFHHVSTAFL
101: ELDTDYLEVI KDITKRMGEG MAKFLSKEVE TIDDYNEYCH YVAGLCGLGL SKLFYASGRE DLAPESLSIS MGLFLQKISI VRDYLEDINE LPKCRMFWPR
201: QIWSKYVNKL KDFKYEDNSV KAVQCLNEMV TNALLHVEYC LVYMYNLRDP AIFQFCAIPL VINMGNLTVY YNNVVIFKGV VEMRRGLCLR LLIRRGRWLM
301: STELSLTFVV

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.