Factsheet for Os03t0805100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013048_P005	Maize	cytosol	85.11	85.54
EER93257	Sorghum	cytosol	84.62	84.62
TraesCS5A01G454500.1	Wheat	cytosol	83.13	82.92
TraesCS5B01G464600.1	Wheat	cytosol	82.63	82.43
TraesCS5D01G465000.1	Wheat	cytosol	82.38	82.18
Zm00001d034516_P001	Maize	cytosol	83.13	78.82
Os07t0200700-01	Rice	cytosol	78.41	77.07
GSMUA_Achr4P17290_001	Banana	cytosol	54.59	75.09
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	20.35	72.57
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	70.22	68.86
VIT_03s0038g00450.t01	Wine grape	cytosol	69.23	67.55
AT4G34640.1	Thale cress	cytosol	67.49	66.34
TraesCS5D01G032600.1	Wheat	cytosol	29.03	66.1
CDX76294	Canola	cytosol	65.26	65.75
PGSC0003DMT400008770	Potato	cytosol	67.0	65.69
CDX75450	Canola	cytosol	64.76	65.58
Bra011548.1-P	Field mustard	cytosol	64.76	65.58
CDX69075	Canola	cytosol	64.02	64.82
HORVU5Hr1G109300.4	Barley	mitochondrion	82.63	64.66
CDY45322	Canola	cytosol	64.27	63.64
CDY17472	Canola	cytosol	67.25	63.62
Bra017667.1-P	Field mustard	cytosol	60.79	63.31
CDX72493	Canola	cytosol	66.75	63.15
Bra017668.1-P	Field mustard	cytosol	37.97	62.96
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	74.19	62.16
PGSC0003DMT400089434	Potato	cytosol	58.56	61.78
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	63.03	61.5
Solyc10g054130.1.1	Tomato	unclear	66.0	61.01
Bra034641.1-P	Field mustard	cytosol	66.75	61.0
Solyc10g079040.1.1	Tomato	cytosol	46.65	60.65
CDX75451	Canola	cytosol	61.79	60.29
Bra011549.1-P	Field mustard	cytosol	62.03	59.81
CDX69076	Canola	cytosol, plasma membrane, plastid	62.53	58.88
KRH58230	Soybean	mitochondrion	11.66	58.75
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.69	58.49
CDX72494	Canola	cytosol	57.32	58.48
CDY45323	Canola	cytosol	30.27	55.96
Solyc10g079060.1.1	Tomato	cytosol	58.31	55.04

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	EntrezGene:4334492	MapMan:9.1.5.1	ProteinID:AAS07223.1
EMBL:AB007501	ProteinID:ABF99429.1	EMBL:AK242592	ProteinID:BAF13539.1	ProteinID:BAS86933.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152
GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126
GO:GO:0016740	GO:GO:0016765	GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
UniProt:O22105	EnsemblPlantsGene:Os03g0805100	EnsemblPlants:Os03t0805100-01	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045
PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559
TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniParc:UPI00000A099B	RefSeq:XP_015630544.1	SEG:seg	:

Description

Similar to Squalene synthase (EC 2.5.1.21). (Os03t0805100-01)

Coordinates

chr3:+:33605547..33612423

Molecular Weight (calculated)

46102.1 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.081

Length

403 amino acids

Sequence
(BLAST)

001: MGVLSRPEEV LPLVKLRVAA GRIKRQIPPE EHWAFAYTML QRVSRSFALV IQQLGPDLRN AVCIFYLVLR ALDTVEDDTS IPAAVKVPIL KEFHRHIYNR
101: DWHYSCGTKD YKLLMDKFRL VSTAFLELGQ GYQEAIEEIT RLMGAGMAKF ICKEVETVDD YNEYCHYVAG LVGYGLSRLF HAGGTEDLAS DSLSNSMGLF
201: LQKINIIRDY LEDINEIPKS RMFWPREIWS KYVNKLEDLK YEENSEKAVQ CLNDMVTNAL SHAEDCLQYM SALKDHAIFR FCAIPQIMAI GTCAICYNNV
301: NVFRGVVKMR RGLTARVIDE TNTMSDVYTA FYEFSSLIES KIDNNDPNAS LTRKRVDAIK RTCKSSCSLK RRGYDLEKSK YNSMLIMVVL LLVAIVLGMI
401: YAK

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.