CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	CDX78905	AT4G19030.1	21798944
AT4G34640.1	CDX98596	AT4G19030.1	21798944
AT4G34640.1	CDX99411	AT4G19030.1	21798944
AT4G34640.1	CDY01565	AT4G19030.1	21798944
AT4G34640.1	CDX70995	AT5G22290.1	21798944
AT4G34640.1	CDX88803	AT5G22290.1	21798944
AT4G34640.1	CDX92368	AT5G22290.1	21798944
AT4G34640.1	CDY09128	AT5G22290.1	21798944
AT4G34640.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45322	Canola	cytosol	92.72	97.05
CDX76294	Canola	cytosol	88.03	93.75
CDX75450	Canola	cytosol	86.62	92.71
CDX69075	Canola	cytosol	86.39	92.46
AT4G34640.1	Thale cress	cytosol	88.5	91.95
CDY17472	Canola	cytosol	90.85	90.85
KRH24387	Soybean	cytosol	77.46	79.9
CDX75451	Canola	cytosol	76.29	78.69
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	76.06	78.45
VIT_03s0038g00450.t01	Wine grape	cytosol	75.59	77.97
CDX69076	Canola	cytosol, plasma membrane, plastid	77.23	76.87
CDX72494	Canola	cytosol	69.48	74.94
CDY45323	Canola	cytosol	37.79	73.85
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	70.42	72.99
PGSC0003DMT400008770	Potato	cytosol	67.61	70.07
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	18.54	69.91
GSMUA_Achr4P17290_001	Banana	cytosol	46.48	67.58
Os03t0805100-01	Rice	cytosol	63.15	66.75
Zm00001d013048_P005	Maize	cytosol	62.68	66.58
EER93257	Sorghum	cytosol	62.44	66.0
Solyc10g054130.1.1	Tomato	unclear	66.43	64.91
TraesCS5A01G454500.1	Wheat	cytosol	61.5	64.85
TraesCS5B01G464600.1	Wheat	cytosol	61.27	64.6
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.98	64.15
TraesCS5D01G465000.1	Wheat	cytosol	60.8	64.11
Os07t0200700-01	Rice	cytosol	61.27	63.66
PGSC0003DMT400089434	Potato	cytosol	56.34	62.83
Zm00001d034516_P001	Maize	cytosol	61.5	61.65
Solyc10g079040.1.1	Tomato	cytosol	44.6	61.29
Solyc10g079060.1.1	Tomato	cytosol	57.75	57.61
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	63.15	55.93
TraesCS5D01G032600.1	Wheat	cytosol	21.83	52.54
HORVU5Hr1G109300.4	Barley	mitochondrion	61.27	50.68

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:A0A078CBX1	EnsemblPlants:CDX72493
ProteinID:CDX72493	ProteinID:CDX72493.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575
GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016765	GO:GO:0051996
EnsemblPlantsGene:GSBRNA2T00100022001	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045
PANTHER:PTHR11626	MetaCyc:PWY-5670	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS
TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniPathway:UPA00767	UniParc:UPI0004EDE0E4	:

Description

BnaC07g45150D

Coordinates

chrLK031796:+:1559545..1562501

Molecular Weight (calculated)

48791.2 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.154

Length

426 amino acids

Sequence
(BLAST)

001: MGSLGTFLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWAFC YSMLHKVSRS FSLVIQQLGT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK LPILIAFHRH
101: IYDTDWHYSC KFYSIQTLGG TKEYKVLMDQ FHHVSAAFLE LEKGYQEAIE EITKRMGAGM AKFICQEVET VDDYDEYCHY VAGLVGLGLS KLFLASGSEV
201: LTPDWEHISN SMGLFLQKTN IIRDYLEDIN EIPKSRMFWP RKIWGKYAGK LEDLKYEKNS SNAVQCLNEM VTDALTHIED CLKYMAALRD PSIFRFCAIP
301: QIMAIGTLAL CYNNVQVFRG VVKLRRGLTA KVIDRTKTMA DVYGAFYDFS CMLKTKVDKN DPNASKTLKQ LEDVQQLCRD NGVLHKRKSY VNDKGQSNNL
401: YIVMLVILLA IVFAYLRANG GVSDEQ

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.