Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- endoplasmic reticulum 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24387 | Soybean | cytosol | 96.85 | 96.85 |
| VIT_03s0038g00450.t01 | Wine grape | cytosol | 86.44 | 86.44 |
| Solyc01g110290.2.1 | Tomato | cytosol, nucleus, unclear | 81.6 | 82.0 |
| CDX76294 | Canola | cytosol | 76.76 | 79.25 |
| CDX69075 | Canola | cytosol | 75.79 | 78.64 |
| Bra011548.1-P | Field mustard | cytosol | 75.79 | 78.64 |
| CDX75450 | Canola | cytosol | 75.79 | 78.64 |
| AT4G34640.1 | Thale cress | cytosol | 77.97 | 78.54 |
| PGSC0003DMT400008770 | Potato | cytosol | 76.76 | 77.13 |
| CDY17472 | Canola | cytosol | 79.18 | 76.76 |
| Bra017667.1-P | Field mustard | cytosol | 71.91 | 76.74 |
| CDX72493 | Canola | cytosol | 78.45 | 76.06 |
| CDY45322 | Canola | cytosol | 74.58 | 75.68 |
| KRH58230 | Soybean | mitochondrion | 14.29 | 73.75 |
| Bra034641.1-P | Field mustard | cytosol | 78.21 | 73.24 |
| AT4G34650.1 | Thale cress | cytosol, nucleus, plasma membrane | 72.64 | 72.64 |
| CDX75451 | Canola | cytosol | 71.67 | 71.67 |
| Solyc10g054130.1.1 | Tomato | unclear | 75.54 | 71.56 |
| Bra011549.1-P | Field mustard | cytosol | 72.4 | 71.53 |
| CDX72494 | Canola | cytosol | 67.8 | 70.89 |
| CDX69076 | Canola | cytosol, plasma membrane, plastid | 72.88 | 70.33 |
| CDY45323 | Canola | cytosol | 37.05 | 70.18 |
| Bra017668.1-P | Field mustard | cytosol | 41.16 | 69.96 |
| PGSC0003DMT400021134 | Potato | cytosol, extracellular, peroxisome | 8.96 | 69.81 |
| PGSC0003DMT400089434 | Potato | cytosol | 64.41 | 69.63 |
| Solyc10g079040.1.1 | Tomato | cytosol | 50.12 | 66.77 |
| Solyc10g079060.1.1 | Tomato | cytosol | 64.16 | 62.06 |
Protein Annotations
| KEGG:00100+2.5.1.21 | KEGG:00909+2.5.1.21 | Gene3D:1.10.600.10 | EntrezGene:100775983 | MapMan:9.1.5.1 | EMBL:ACUP02006798 |
| EnsemblPlantsGene:GLYMA_11G112000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004310 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006629 | GO:GO:0006696 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016126 | GO:GO:0016740 | GO:GO:0016765 | GO:GO:0045338 | GO:GO:0051996 |
| UniProt:I1LJ81 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | ProteinID:KRH29363.1 | EnsemblPlants:KRH29364 | ProteinID:KRH29364 |
| ProteinID:KRH29364.1 | ProteinID:KRH29365.1 | PFAM:PF00494 | ScanProsite:PS01044 | ScanProsite:PS01045 | PANTHER:PTHR11626 |
| MetaCyc:PWY-5670 | SUPFAM:SSF48576 | InterPro:Squ/phyt_synthse | InterPro:Squal_synth-like | InterPro:Squalene/phytoene_synthase_CS | TIGRFAMs:TIGR01559 |
| TMHMM:TMhelix | InterPro:Trans_IPPS_HH | UniParc:UPI0001CAB0E8 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr11:-:8534994..8542137
Molecular Weight (calculated)
47015.0 Da
IEP (calculated)
6.580
GRAVY (calculated)
-0.077
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGAILKN PDDFYPLLKL KMAARNAEKQ IPPEPHWAFC YTMLHKVSRS FALVIQQLGT ELRNAVCIFY LVLRALDTVE DDTSIETDVK VPILIAFHRH
101: IYDRDWHFSC GTKEYKVLMD QFHHVSTAFL ELGKNYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YVAGLVGLGL SKLFHASGSE DLAPDDLSNS
201: MGLFLQKTNI IRDYLEDINE IPKSRMFWPR QIWSKYVNKL EDLKYEENSV KAVQCLNDMV TNALMHAEDC LTYMAALRDP PIFRFCAIPQ IMAIGTLALC
301: YNNIEVFRGV VKMRRGLTAK VIDRTTTMAD VYGAFFDFAS MLESKVDKND PNATKALSRL EAIQKTCRES GLLSKRKSYI VKDESGYGST MIIVLVIMVS
401: IIFSYLSASH QNN
101: IYDRDWHFSC GTKEYKVLMD QFHHVSTAFL ELGKNYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YVAGLVGLGL SKLFHASGSE DLAPDDLSNS
201: MGLFLQKTNI IRDYLEDINE IPKSRMFWPR QIWSKYVNKL EDLKYEENSV KAVQCLNDMV TNALMHAEDC LTYMAALRDP PIFRFCAIPQ IMAIGTLALC
301: YNNIEVFRGV VKMRRGLTAK VIDRTTTMAD VYGAFFDFAS MLESKVDKND PNATKALSRL EAIQKTCRES GLLSKRKSYI VKDESGYGST MIIVLVIMVS
401: IIFSYLSASH QNN
001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN
Arabidopsis Description
SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.